PMC Links for Nucleotide (Select 6651465) - PMC

Select item 62230331.

Characterization of minority HIV-1 drug resistant variants in the United Kingdom following the verification of a deep sequencing-based HIV-1 genotyping and tropism assay

Nicholas Silver, Mary Paynter, Georgina McAllister, Maureen Atchley, Christine Sayir, John Short, Dane Winner, David J. Alouani, Freddie H. Sharkey, Kicki Bergefall, Kate Templeton, David Carrington, Miguel E. Quiñones-Mateu

AIDS Res Ther. 2018; 15: 18. Published online 2018 Nov 8. doi: 10.1186/s12981-018-0206-y

PMCID:: PMC6223033

Abstract Article PDF–2.9M

Select item 41548672.

Subtype Classification of Iranian HIV-1 Sequences Registered in the HIV Databases, 2006-2013

Kazem Baesi, Samaneh Moallemi, Molood Farrokhi, Seyed Ahmad Seyed Alinaghi, Hong–Ha M. Truong

PLoS One. 2014; 9(9): e105098. Published online 2014 Sep 4. doi: 10.1371/journal.pone.0105098

PMCID:: PMC4154867

Abstract Article PDF–304K

Select item 39513833.

Are subtype differences important in HIV drug resistance?

RJ Lessells, DK Katzenstein, T de Oliveira

Curr Opin Virol. Author manuscript; available in PMC 2014 Mar 12.

Published in final edited form as: Curr Opin Virol. 2012 Oct; 2(5): 636–643. Published online 2012 Sep 21. doi: 10.1016/j.coviro.2012.08.006

PMCID:: PMC3951383

Abstract Article PDF–500K

Select item 39389474.

Short Communication: Molecular Epidemiology of HIV Type 1 Infection in Northern Greece (2009–2010): Evidence of a Transmission Cluster of HIV Type 1 Subtype A1 Drug-Resistant Strains Among Men Who Have Sex with Men

Zoi-Anna Antoniadou, Ioanna Kousiappa, Lemonia Skoura, Dimitris Pilalas, Simeon Metallidis, Pavlos Nicolaidis, Nicolaos Malisiovas, Leondios G. Kostrikis

AIDS Res Hum Retroviruses. 2014 Mar 1; 30(3): 225–232. doi: 10.1089/aid.2013.0166

PMCID:: PMC3938947

Abstract Article PDF–198K

Select item 35859635.

Transmission Patterns of HIV-Subtypes A/AE versus B: Inferring Risk-Behavior Trends and Treatment-Efficacy Limitations from Viral Genotypic Data Obtained Prior to and during Antiretroviral Therapy

Boaz Avidor, Dan Turner, Zohar Mor, Shirley Chalom, Klaris Riesenberg, Eduardo Shahar, Shimon Pollack, Daniel Elbirt, Zev Sthoeger, Shlomo Maayan, Karen Olshtain-Pops, Diana Averbuch, Michal Chowers, Valery Istomin, Emilia Anis, Ella Mendelson, Daniela Ram, Itzchak Levy, Zehava Grossman

PLoS One. 2013; 8(3): e57789. Published online 2013 Mar 1. doi: 10.1371/journal.pone.0057789

PMCID:: PMC3585963

Abstract Article PDF–725K

Select item 33602336.

A new unique recombinant HIV-1 revealed in Belarus

VF Eremin, EL Gasich, SV Sasinovich

Retrovirology. 2012; 9(Suppl 1): P32. Published online 2012 May 25. doi: 10.1186/1742-4690-9-S1-P32

PMCID:: PMC3360233

Article PDF–163K

Select item 29813807.

Identification and Characterization of CRF02_AG, CRF06_cpx, and CRF09_cpx Recombinant Subtypes in Mali, West Africa

Hiromi Imamichi, Ousmane Koita, Djeneba Dabitao, Sounkalo Dao, Mahamadou Ibrah, Dramane Sogoba, Robin L. Dewar, Steve C. Berg, Min-Kang Jiang, Mark Parta, Janice A. Washington, Michael A. Polis, H. Clifford Lane, Anatole Tounkara

AIDS Res Hum Retroviruses. 2009 Jan; 25(1): 45–55. doi: 10.1089/aid.2008.0111

PMCID:: PMC2981380

Abstract Article PDF–304K

Select item 27162998.

Discovery of novel targets for multi-epitope vaccines: Screening of HIV-1 genomes using association rule mining

Sinu Paul, Helen Piontkivska

Retrovirology. 2009; 6: 62. Published online 2009 Jul 6. doi: 10.1186/1742-4690-6-62

PMCID:: PMC2716299

Abstract Article PDF–996K

Select item 26390129.

Phylogenetic inference under recombination using Bayesian stochastic topology selection

Alex Webb, John M. Hancock, Chris C. Holmes

Bioinformatics. 2009 Jan 15; 25(2): 197–203. Published online 2008 Nov 20. doi: 10.1093/bioinformatics/btn607

PMCID:: PMC2639012

Abstract Article PDF–228K

Select item 259735710.

Human Immunodeficiency Virus Type 1 Reverse-Transcriptase and Protease Subtypes: Classification, Amino Acid Mutation Patterns, and Prevalence in a Northern California Clinic-Based Population

Matthew J. Gonzales, Rhoderick N. Machekano, Robert W. Shafer

J Infect Dis. Author manuscript; available in PMC 2008 Dec 8.

Published in final edited form as: J Infect Dis. 2001 Oct 15; 184(8): 998–1006. Published online 2001 Sep 10. doi: 10.1086/323601

PMCID:: PMC2597357

Abstract Article PDF–1.0M

Select item 124847011.

Use of Sequence Data Generated in the Bayer TruGene Genotyping Assay To Recognize and Characterize Non-Subtype-B Human Immunodeficiency Virus Type 1 Strains

Diane L. Hirigoyen, Charles P. Cartwright

J Clin Microbiol. 2005 Oct; 43(10): 5263–5271. doi: 10.1128/JCM.43.10.5263-5271.2005

PMCID:: PMC1248470

Abstract Article PDF–342K

Select item 52181612.

Diversity of Human Immunodeficiency Virus Type 1 Subtype A and CRF03_AB Protease in Eastern Europe: Selection of the V77I Variant and Its Rapid Spread in Injecting Drug User Populations

Nikita I. Roudinskii, Anna L. Sukhanova, Elena V. Kazennova, Jonathan N. Weber, Vadim V. Pokrovsky, Vladimir M. Mikhailovich, Aleksei F. Bobkov

J Virol. 2004 Oct; 78(20): 11276–11287. doi: 10.1128/JVI.78.20.11276-11287.2004

PMCID:: PMC521816

Abstract Article PDF–482K

Select item 42784413.

Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for Sequence-Based Analysis of Diverse Human Immunodeficiency Virus Type 1 Strains

Susan H. Eshleman, John Hackett, Jr., Priscilla Swanson, Shawn P. Cunningham, Birgit Drews, Catherine Brennan, Sushil G. Devare, Léopold Zekeng, Lazare Kaptué, Natalia Marlowe

J Clin Microbiol. 2004 Jun; 42(6): 2711–2717. doi: 10.1128/JCM.42.6.2711-2717.2004

PMCID:: PMC427844

Abstract Article PDF–76K

Select item 13589214.

Human Immunodeficiency Virus Type 1 (HIV-1) Quasispecies at the Sites of Mycobacterium tuberculosis Infection Contribute to Systemic HIV-1 Heterogeneity

Kalonji R. Collins, Miguel E. Quiñones-Mateu, Mianda Wu, Henry Luzze, John L. Johnson, Christina Hirsch, Zahra Toossi, Eric J. Arts

J Virol. 2002 Feb; 76(4): 1697–1706. doi: 10.1128/JVI.76.4.1697-1706.2002

PMCID:: PMC135892

Abstract Article PDF–497K

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