PMC Links for Nucleotide (Select 831919692) - PMC

Links from Nucleotide

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Select item 40359371.

Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences

Waleed Nasser, Stephen B. Beres, Randall J. Olsen, Melissa A. Dean, Kelsey A. Rice, S. Wesley Long, Karl G. Kristinsson, Magnus Gottfredsson, Jaana Vuopio, Kati Raisanen, Dominique A. Caugant, Martin Steinbakk, Donald E. Low, Allison McGeer, Jessica Darenberg, Birgitta Henriques-Normark, Chris A. Van Beneden, Steen Hoffmann, James M. Musser

Proc Natl Acad Sci U S A. 2014 Apr 29; 111(17): E1768–E1776. Published online 2014 Apr 14. doi: 10.1073/pnas.1403138111

PMCID:: PMC4035937

Article PDF–2.2M

Select item 318902.

Complete genome sequence of an M1 strain of Streptococcus pyogenes

Joseph J. Ferretti, William M. McShan, Dragana Ajdic, Dragutin J. Savic, Gorana Savic, Kevin Lyon, Charles Primeaux, Steven Sezate, Alexander N. Suvorov, Steve Kenton, Hong Shing Lai, Shao Ping Lin, Yudong Qian, Hong Gui Jia, Fares Z. Najar, Qun Ren, Hua Zhu, Lin Song, Jim White, Xiling Yuan, Sandra W. Clifton, Bruce A. Roe, Robert McLaughlin

Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4658–4663. doi: 10.1073/pnas.071559398

PMCID:: PMC31890

Article PDF–618K

Select item 68822793.

Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria (Mollicutes)

Thomas Ipoutcha, Iason Tsarmpopoulos, Vincent Talenton, Christine Gaspin, Annick Moisan, Caray A. Walker, Joe Brownlie, Alain Blanchard, Patricia Thebault, Pascal Sirand-Pugnet

Front Microbiol. 2019; 10: 2701. Published online 2019 Nov 21. doi: 10.3389/fmicb.2019.02701

PMCID:: PMC6882279

Article PDF–2.2M

Select item 64310274.

Conserved and specific features of Streptococcus pyogenes and Streptococcus agalactiae transcriptional landscapes

Isabelle Rosinski-Chupin, Elisabeth Sauvage, Agnès Fouet, Claire Poyart, Philippe Glaser

BMC Genomics. 2019; 20: 236. Published online 2019 Mar 22. doi: 10.1186/s12864-019-5613-5

PMCID:: PMC6431027

Article PDF–2.4M

Select item 63480985.

Prioritizing bona fide bacterial small RNAs with machine learning classifiers

Erik J.J. Eppenhof, Lourdes Peña-Castillo

PeerJ. 2019; 7: e6304. Published online 2019 Jan 24. doi: 10.7717/peerj.6304

PMCID:: PMC6348098

Article PDF–767K

Select item 63472916.

Utilization of proliferable extracellular amastigotes for transient gene expression, drug sensitivity assay, and CRISPR/Cas9-mediated gene knockout in Trypanosoma cruzi

Yuko Takagi, Yukie Akutsu, Motomichi Doi, Koji Furukawa

PLoS Negl Trop Dis. 2019 Jan; 13(1): e0007088. Published online 2019 Jan 14. doi: 10.1371/journal.pntd.0007088

PMCID:: PMC6347291

Article PDF–2.5M

Select item 63115067.

Discovery of the actinoplanic acid pathway in Streptomyces rapamycinicus reveals a genetically conserved synergism with rapamycin

Peter Mrak, Philipp Krastel, Petra Pivk Lukančič, Jianshi Tao, Dominik Pistorius, Charles M. Moore

J Biol Chem. 2018 Dec 28; 293(52): 19982–19995. Published online 2018 Oct 16. doi: 10.1074/jbc.RA118.005314

PMCID:: PMC6311506

Article PDF–3.0M

Select item 62888348.

RNA-Seq-Based Analysis Reveals Heterogeneity in Mature 16S rRNA 3′ Termini and Extended Anti-Shine-Dalgarno Motifs in Bacterial Species

Jordan R. Silke, Yulong Wei, Xuhua Xia

G3 (Bethesda) 2018 Dec; 8(12): 3973–3979. Published online 2018 Oct 24. doi: 10.1534/g3.118.200729

PMCID:: PMC6288834

Article PDF–1.6M

Select item 62845659.

RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B

Laura Broglia, Solange Materne, Anne-Laure Lécrivain, Karin Hahnke, Anaïs Le Rhun, Emmanuelle Charpentier

RNA Biol. 2018; 15(10): 1336–1347. Published online 2018 Oct 18. doi: 10.1080/15476286.2018.1532253

PMCID:: PMC6284565

Article PDF–1.9M

Select item 622220410.

Genomic Sequencing of High-Efficiency Transducing Streptococcal Bacteriophage A25: Consequences of Escape from Lysogeny

Kimberly McCullor, Brandon Postoak, Maliha Rahman, Catherine King, W. Michael McShan

J Bacteriol. 2018 Dec 1; 200(23): e00358-18. Prepublished online 2018 Sep 17. Published online 2018 Nov 6. doi: 10.1128/JB.00358-18

PMCID:: PMC6222204

Article PDF–2.5M

Select item 611490811.

BAMLET kills chemotherapy-resistant mesothelioma cells, holding oleic acid in an activated cytotoxic state

Emma M. Rath, Yuen Yee Cheng, Mark Pinese, Kadir H. Sarun, Amanda L. Hudson, Christopher Weir, Yiwei D. Wang, Anders P. Håkansson, Viive M. Howell, Guo Jun Liu, Glen Reid, Robert B. Knott, Anthony P. Duff, W. Bret Church

PLoS One. 2018; 13(8): e0203003. Published online 2018 Aug 29. doi: 10.1371/journal.pone.0203003

PMCID:: PMC6114908

Article PDF–10M

Select item 607075112.

Microevolution of Streptococcus agalactiae ST-261 from Australia Indicates Dissemination via Imported Tilapia and Ongoing Adaptation to Marine Hosts or Environment

Minami Kawasaki, Jerome Delamare-Deboutteville, Rachel O. Bowater, Mark J. Walker, Scott Beatson, Nouri L. Ben Zakour, Andrew C. Barnes

Appl Environ Microbiol. 2018 Aug 15; 84(16): e00859-18. Prepublished online 2018 Jun 18. Published online 2018 Aug 1. doi: 10.1128/AEM.00859-18

PMCID:: PMC6070751

Article PDF–4.7M

Select item 594331613.

Amino acid compositions contribute to the proteins’ evolution under the influence of their abundances and genomic GC content

Meng-Ze Du, Shuo Liu, Zhi Zeng, Labena Abraham Alemayehu, Wen Wei, Feng-Biao Guo

Sci Rep. 2018; 8: 7382. Published online 2018 May 9. doi: 10.1038/s41598-018-25364-1

PMCID:: PMC5943316

Article PDF–2.9M

Select item 592297614.

CRISPR-based herd immunity can limit phage epidemics in bacterial populations

Pavel Payne, Lukas Geyrhofer, Nicholas H Barton, Jonathan P Bollback

eLife. 2018; 7: e32035. Published online 2018 Mar 9. doi: 10.7554/eLife.32035

PMCID:: PMC5922976

Article PDF–3.3M

Select item 528983515.

The Role of +4U as an Extended Translation Termination Signal in Bacteria

Yulong Wei, Xuhua Xia

Genetics. 2017 Feb; 205(2): 539–549. Published online 2016 Nov 29. doi: 10.1534/genetics.116.193961

PMCID:: PMC5289835

Article PDF–1.5M

Select item 503797416.

Next generation sequencing data of a defined microbial mock community

Esther Singer, Bill Andreopoulos, Robert M. Bowers, Janey Lee, Shweta Deshpande, Jennifer Chiniquy, Doina Ciobanu, Hans-Peter Klenk, Matthew Zane, Christopher Daum, Alicia Clum, Jan-Fang Cheng, Alex Copeland, Tanja Woyke

Sci Data. 2016; 3: 160081. Published online 2016 Sep 27. doi: 10.1038/sdata.2016.81