PMC Links for Protein (Select 122028) - PMC

Select item 55404451.

Metabolic Regulation of Gene Expression by Histone Lysine β-hydroxybutyrylation

Zhongyu Xie, Di Zhang, Dongjun Chung, Zhanyun Tang, He Huang, Lunzhi Dai, Shankang Qi, Jingya Li, Gozde Colak, Yue Chen, Chunmei Xia, Chao Peng, Haibin Ruan, Matt Kirkey, Danli Wang, Lindy M. Jensen, Oh Kwang Kwon, Sangkyu Lee, Scott D. Pletcher, Minjia Tan, David B. Lombard, Kevin P. White, Hongyu Zhao, Jia Li, Robert G. Roeder, Yang Xiaoyong, Yingming Zhao

Mol Cell. Author manuscript; available in PMC 2017 Aug 2.

Published in final edited form as: Mol Cell. 2016 Apr 21; 62(2): 194–206. doi: 10.1016/j.molcel.2016.03.036

PMCID:: PMC5540445

Abstract Article PDF–1.4M

Select item 39220522.

Signaling Kinase AMPK Activates Stress-Promoted Transcription via Histone H2B Phosphorylation

David Bungard, Benjamin J. Fuerth, Ping-Yao Zeng, Brandon Faubert, Nancy L. Maas, Benoit Viollet, David Carling, Craig B. Thompson, Russell G. Jones, Shelley L. Berger

Science. Author manuscript; available in PMC 2014 Feb 12.

Published in final edited form as: Science. 2010 Sep 3; 329(5996): 1201–1205. Published online 2010 Jul 15. doi: 10.1126/science.1191241

PMCID:: PMC3922052

Abstract Article PDF–427K

Select item 37699713.

SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways

Jeongsoon Park, Yue Chen, Daniel X. Tishkoff, Chao Peng, Minjia Tan, Lunzhai Dai, Zhongyu Xie, Yi Zhang, Bernadette M.M. Zwaans, Mary E. Skinner, David B. Lombard, Yingming Zhao

Mol Cell. Author manuscript; available in PMC 2014 Jun 27.

Published in final edited form as: Mol Cell. 2013 Jun 27; 50(6): 919–930. doi: 10.1016/j.molcel.2013.06.001

PMCID:: PMC3769971

Abstract Article PDF–2.4M

Select item 34188374.

Lysine Succinylation and Lysine Malonylation in Histones

Zhongyu Xie, Junbiao Dai, Lunzhi Dai, Minjia Tan, Zhongyi Cheng, Yeming Wu, Jef D. Boeke, Yingming Zhao

Mol Cell Proteomics. 2012 May; 11(5): 100–107. Published online 2012 Mar 4. doi: 10.1074/mcp.M111.015875

PMCID:: PMC3418837

Abstract Article PDF–2.1M

Select item 31764435.

Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

Minjia Tan, Hao Luo, Sangkyu Lee, Fulai Jin, Jeong Soo Yang, Emilie Montellier, Thierry Buchou, Zhongyi Cheng, Sophie Rousseaux, Nisha Rajagopal, Zhike Lu, Zhen Ye, Qin Zhu, Joanna Wysocka, Yang Ye, Saadi Khochbin, Bing Ren, Yingming Zhao

Cell. Author manuscript; available in PMC 2012 Sep 16.

Published in final edited form as: Cell. 2011 Sep 16; 146(6): 1016–1028. doi: 10.1016/j.cell.2011.08.008

PMCID:: PMC3176443

Abstract Article PDF–4.2M

Select item 26803416.

Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse

Deanna M. Church, Leo Goodstadt, LaDeana W. Hillier, Michael C. Zody, Steve Goldstein, Xinwe She, Carol J. Bult, Richa Agarwala, Joshua L. Cherry, Michael DiCuccio, Wratko Hlavina, Yuri Kapustin, Peter Meric, Donna Maglott, Zoë Birtle, Ana C. Marques, Tina Graves, Shiguo Zhou, Brian Teague, Konstantinos Potamousis, Christopher Churas, Michael Place, Jill Herschleb, Ron Runnheim, Daniel Forrest, James Amos-Landgraf, David C. Schwartz, Ze Cheng, Kerstin Lindblad-Toh, Evan E. Eichler, Chris P. Ponting, The Mouse Genome Sequencing Consortium

PLoS Biol. 2009 May; 7(5): e1000112. Published online 2009 May 26. doi: 10.1371/journal.pbio.1000112

PMCID:: PMC2680341

Abstract Article PDF–1006K

Select item 22128077.

Phosphorylation of Histone H2B at DNA Double-Strand Breaks

Oscar Fernandez-Capetillo, C. David Allis, André Nussenzweig

J Exp Med. 2004 Jun 21; 199(12): 1671–1677. doi: 10.1084/jem.20032247

PMCID:: PMC2212807

Abstract Article PDF–395K

Select item 3407138.

Mouse histone H2A and H2B genes: four functional genes and a pseudogene undergoing gene conversion with a closely linked functional gene.

T J Liu, L Liu, W F Marzluff

Nucleic Acids Res. 1987 Apr 10; 15(7): 3023–3039. doi: 10.1093/nar/15.7.3023

PMCID:: PMC340713

Summary Page Browse PDF–1.5M

Select item 59433189.

Isozyme-specific comprehensive characterization of transglutaminase-crosslinked substrates in kidney fibrosis

Hideki Tatsukawa, Risa Otsu, Yuji Tani, Ryosuke Wakita, Kiyotaka Hitomi

Sci Rep. 2018; 8: 7306. Published online 2018 May 9. doi: 10.1038/s41598-018-25674-4

PMCID:: PMC5943318

Abstract Article PDF–8.6M

Select item 582720410.

Proteomic and functional analysis identifies galectin-1 as a novel regulatory component of the cytotoxic granule machinery

Tiago Clemente, Narcisio J Vieira, Juan P Cerliani, Colin Adrain, Alexander Luthi, Mariana R Dominguez, Monica Yon, Fernanda C Barrence, Thalita B Riul, Richard D Cummings, Telma M Zorn, Sebastian Amigorena, Marcelo Dias-Baruffi, Maurício M Rodrigues, Seamus J Martin, Gabriel A Rabinovich, Gustavo P Amarante-Mendes

Cell Death Dis. 2017 Dec; 8(12): e3176. Published online 2017 Dec 7. doi: 10.1038/cddis.2017.506

PMCID:: PMC5827204

Abstract Article PDF–3.0M

Select item 550642611.

Biochemical isolation of myonuclei employed to define changes to the myonuclear proteome that occur with aging

Alicia A. Cutler, Eric B. Dammer, Duc M. Doung, Nicholas T. Seyfried, Anita H. Corbett, Grace K. Pavlath

Aging Cell. 2017 Aug; 16(4): 738–749. Published online 2017 May 23. doi: 10.1111/acel.12604

PMCID:: PMC5506426

Abstract Article PDF–966K

Select item 522342812.

MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones

Sara El Kennani, Annie Adrait, Alexey K. Shaytan, Saadi Khochbin, Christophe Bruley, Anna R. Panchenko, David Landsman, Delphine Pflieger, Jérôme Govin

Epigenetics Chromatin. 2017; 10: 2. Published online 2017 Jan 10. doi: 10.1186/s13072-016-0109-x

PMCID:: PMC5223428

Abstract Article PDF–1.4M

Select item 519854413.

Viperid Envenomation Wound Exudate Contributes to Increased Vascular Permeability via a DAMPs/TLR-4 Mediated Pathway

Alexandra Rucavado, Carolina A. Nicolau, Teresa Escalante, Junho Kim, Cristina Herrera, José María Gutiérrez, Jay W. Fox

Toxins (Basel) 2016 Dec; 8(12): 349. Published online 2016 Nov 24. doi: 10.3390/toxins8120349

PMCID:: PMC5198544

Abstract Article PDF–1.9M

Select item 422348714.

Quantitative Proteomic Analysis Reveals Metabolic Alterations, Calcium Dysregulation, and Increased Expression of Extracellular Matrix Proteins in Laminin α2 Chain–deficient Muscle

Bruno Menezes de Oliveira, Cintia Y. Matsumura, Cibely C. Fontes-Oliveira, Kinga I. Gawlik, Helena Acosta, Patrik Wernhoff, Madeleine Durbeej

Mol Cell Proteomics. 2014 Nov; 13(11): 3001–3013. Published online 2014 Jul 3. doi: 10.1074/mcp.M113.032276

PMCID:: PMC4223487

Abstract Article PDF–1.2M

Select item 51450015.

Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA

Yunhe Bao, Kasey Konesky, Young-Jun Park, Simona Rosu, Pamela N Dyer, Danny Rangasamy, David J Tremethick, Paul J Laybourn, Karolin Luger

EMBO J. 2004 Aug 18; 23(16): 3314–3324. Published online 2004 Jul 15. doi: 10.1038/sj.emboj.7600316

PMCID:: PMC514500

Abstract Article PDF–450K

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