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Links from Protein

Items: 14

1.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan F. Beltran, Christen A. Rivera-Erick, Kaixiong Ye, Ting-Yi Wang, Li Yao, Matthew Mort, Peter D. Stenson, David N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu
Nat Commun. 2019; 10: 4141. Published online 2019 Sep 12. doi: 10.1038/s41467-019-11959-3
PMCID:
PMC6742646
AbstractArticlePDF–1.2M
2.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
3.
Accumulation of p53 via down-regulation of UBE2D family genes is a critical pathway for cadmium-induced renal toxicity
Jin-Yong Lee, Maki Tokumoto, Yasuyuki Fujiwara, Tatsuya Hasegawa, Yoshiyuki Seko, Akinori Shimada, Masahiko Satoh
Sci Rep. 2016; 6: 21968. Published online 2016 Feb 25. doi: 10.1038/srep21968
PMCID:
PMC4766413
AbstractArticlePDF–2.2M
4.
Leveraging the power of next-generation sequencing to generate interactome datasets
Haiyuan Yu, Leah Tardivo, Stanley Tam, Evan Weiner, Fana Gebreab, Changyu Fan, Nenad Svrzikapa, Tomoko Hirozane-Kishikawa, Edward Rietman, Xinping Yang, Julie Sahalie, Kourosh Salehi-Ashtiani, Tong Hao, Michael E. Cusick, David E. Hill, Frederick P. Roth, Pascal Braun, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2011 Dec 1.
Published in final edited form as: Nat Methods. 2011 Jun; 8(6): 478–480. Published online 2011 Apr 24. doi: 10.1038/nmeth.1597
PMCID:
PMC3188388
AbstractArticlePDF–932K
5.
The IDOL–UBE2D complex mediates sterol-dependent degradation of the LDL receptor
Li Zhang, Louise Fairall, Benjamin T. Goult, Anna C. Calkin, Cynthia Hong, Christopher J. Millard, Peter Tontonoz, John W.R. Schwabe
Genes Dev. 2011 Jun 15; 25(12): 1262–1274. doi: 10.1101/gad.2056211
PMCID:
PMC3127428
AbstractArticlePDF–1.3M
6.
The E2 Ubiquitin-conjugating Enzymes Direct Polyubiquitination to Preferred Lysines
Yael David, Tamar Ziv, Arie Admon, Ami Navon
J Biol Chem. 2010 Mar 19; 285(12): 8595–8604. Published online 2010 Jan 8. doi: 10.1074/jbc.M109.089003
PMCID:
PMC2838281
AbstractArticlePDF–1.0M
7.
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
Gabriel Markson, Christina Kiel, Russell Hyde, Stephanie Brown, Panagoula Charalabous, Anja Bremm, Jennifer Semple, Jonathan Woodsmith, Simon Duley, Kourosh Salehi-Ashtiani, Marc Vidal, David Komander, Luis Serrano, Paul Lehner, Christopher M. Sanderson
Genome Res. 2009 Oct; 19(10): 1905–1911. doi: 10.1101/gr.093963.109
PMCID:
PMC2765280
AbstractArticlePDF–425K
8.
A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system
Sjoerd J L van Wijk, Sjoerd J de Vries, Patrick Kemmeren, Anding Huang, Rolf Boelens, Alexandre M J J Bonvin, H Th Marc Timmers
Mol Syst Biol. 2009; 5: 295. Published online 2009 Aug 18. doi: 10.1038/msb.2009.55
Correction in:
Mol Syst Biol. 2009; 5: 317.
PMCID:
PMC2736652
AbstractArticlePDF–5.6M
9.
Functional Proteomics Mapping of a Human Signaling Pathway
Frédéric Colland, Xavier Jacq, Virginie Trouplin, Christelle Mougin, Caroline Groizeleau, Alexandre Hamburger, Alain Meil, Jérôme Wojcik, Pierre Legrain, Jean-Michel Gauthier
Genome Res. 2004 Jul; 14(7): 1324–1332. doi: 10.1101/gr.2334104
PMCID:
PMC442148
AbstractArticlePDF–290K
10.
The E3 ubiquitin ligase and RNA-binding protein ZNF598 orchestrates ribosome quality control of premature polyadenylated mRNAs
Aitor Garzia, Seyed Mehdi Jafarnejad, Cindy Meyer, Clément Chapat, Tasos Gogakos, Pavel Morozov, Mehdi Amiri, Maayan Shapiro, Henrik Molina, Thomas Tuschl, Nahum Sonenberg
Nat Commun. 2017; 8: 16056. Published online 2017 Jul 7. doi: 10.1038/ncomms16056
PMCID:
PMC5504347
AbstractArticlePDF–1.4M
11.
Overexpression of VrUBC1, a Mung Bean E2 Ubiquitin-Conjugating Enzyme, Enhances Osmotic Stress Tolerance in Arabidopsis
Eunsook Chung, Chang-Woo Cho, Hyun-Ah So, Jee-Sook Kang, Young Soo Chung, Jai-Heon Lee
PLoS One. 2013; 8(6): e66056. Published online 2013 Jun 18. doi: 10.1371/journal.pone.0066056
PMCID:
PMC3688854
AbstractArticlePDF–3.5M
12.
A Human Ubiquitin Conjugating Enzyme (E2)-HECT E3 Ligase Structure-function Screen
Yi Sheng, Jenny H. Hong, Ryan Doherty, Tharan Srikumar, Jonathan Shloush, George V. Avvakumov, John R. Walker, Sheng Xue, Dante Neculai, Janet W. Wan, Sung K. Kim, Cheryl H. Arrowsmith, Brian Raught, Sirano Dhe-Paganon
Mol Cell Proteomics. 2012 Aug; 11(8): 329–341. Published online 2012 Apr 10. doi: 10.1074/mcp.O111.013706
PMCID:
PMC3412965
AbstractArticlePDF–2.4M
13.
Anti-Ro52 Autoantibodies from Patients with Sjögren's Syndrome Inhibit the Ro52 E3 Ligase Activity by Blocking the E3/E2 Interface
Alexander Espinosa, Janosch Hennig, Aurélie Ambrosi, Madhanagopal Anandapadmanaban, Martina Sandberg Abelius, Yi Sheng, Filippa Nyberg, Cheryl H. Arrowsmith, Maria Sunnerhagen, Marie Wahren-Herlenius
J Biol Chem. 2011 Oct 21; 286(42): 36478–36491. Published online 2011 Aug 23. doi: 10.1074/jbc.M111.241786
PMCID:
PMC3196112
AbstractArticlePDF–5.0M
14.
What Was the Set of Ubiquitin and Ubiquitin-Like Conjugating Enzymes in the Eukaryote Common Ancestor?
Caroline Michelle, Patrick Vourc’h, Laurence Mignon, Christian R. Andres
J Mol Evol. 2009 Jun; 68(6): 616–628. Published online 2009 May 19. doi: 10.1007/s00239-009-9225-6
PMCID:
PMC2691932
AbstractArticlePDF–456K

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