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Select item 70003941.

Streptomyces sp. VN1, a producer of diverse metabolites including non-natural furan-type anticancer compound

Hue Thi Nguyen, Anaya Raj Pokhrel, Chung Thanh Nguyen, Van Thuy Thi Pham, Dipesh Dhakal, Haet Nim Lim, Hye Jin Jung, Tae-Su Kim, Tokutaro Yamaguchi, Jae Kyung Sohng

Sci Rep. 2020; 10: 1756. Published online 2020 Feb 4. doi: 10.1038/s41598-020-58623-1

PMCID:: PMC7000394

Article PDF–3.6M

Select item 68384732.

Targeted enzyme gene re-positioning: A computational approach for discovering alternative bacterial enzymes for the synthesis of plant-specific secondary metabolites

Yuya Nakamura, Shuichi Hirose, Yuko Taniguchi, Yuki Moriya, Takuji Yamada

Metab Eng Commun. 2019 Dec; 9: e00102. Published online 2019 Sep 9. doi: 10.1016/j.mec.2019.e00102

PMCID:: PMC6838473

Article PDF–2.3M

Select item 67815713.

The BioCyc collection of microbial genomes and metabolic pathways

Peter D Karp, Richard Billington, Ron Caspi, Carol A Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M Keseler, Markus Krummenacker, Peter E Midford, Quang Ong, Wai Kit Ong, Suzanne M Paley, Pallavi Subhraveti

Brief Bioinform. 2019 Jul; 20(4): 1085–1093. Published online 2017 Aug 17. doi: 10.1093/bib/bbx085

PMCID:: PMC6781571

Article PDF–885K

Select item 66826134.

Regulation of Respiratory Pathways in Campylobacterota: A Review

Anne-Xander van der Stel, Marc M. S. M. Wösten

Front Microbiol. 2019; 10: 1719. Published online 2019 Jul 30. doi: 10.3389/fmicb.2019.01719

PMCID:: PMC6682613

Article PDF–2.4M

Select item 66737205.

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Dmitry Meleshko, Hosein Mohimani, Vittorio Tracanna, Iman Hajirasouliha, Marnix H. Medema, Anton Korobeynikov, Pavel A. Pevzner

Genome Res. 2019 Aug; 29(8): 1352–1362. doi: 10.1101/gr.243477.118

PMCID:: PMC6673720

Article PDF–3.6M

Select item 65013976.

BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing

Lusine Khachatryan, Margriet E. M. Kraakman, Alexandra T. Bernards, Jeroen F. J. Laros

BMC Genomics. 2019; 20: 338. Published online 2019 May 6. doi: 10.1186/s12864-019-5723-0

PMCID:: PMC6501397

Article PDF–1.6M

Select item 63060327.

Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic

Olha Schneider, Nebojsa Simic, Finn Lillelund Aachmann, Christian Rückert, Kåre Andre Kristiansen, Jörn Kalinowski, Yi Jiang, Lisong Wang, Cheng-Lin Jiang, Rahmi Lale, Sergey B. Zotchev

Front Microbiol. 2018; 9: 3139. Published online 2018 Dec 19. doi: 10.3389/fmicb.2018.03139

PMCID:: PMC6306032

Article PDF–1000K

Select item 62829628.

The actinobacterial WhiB‐like (Wbl) family of transcription factors

Matthew J. Bush

Mol Microbiol. 2018 Dec; 110(5): 663–676. Published online 2018 Oct 25. doi: 10.1111/mmi.14117

PMCID:: PMC6282962

Article PDF–1.0M

Select item 62478169.

In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus

Rubén Díaz, Gerardo Díaz-Godínez, Miguel Angel Anducho-Reyes, Yuridia Mercado-Flores, Leonardo David Herrera-Zúñiga

Front Microbiol. 2018; 9: 2743. Published online 2018 Nov 14. doi: 10.3389/fmicb.2018.02743

PMCID:: PMC6247816

Article PDF–4.0M

Select item 562568710.

Modeling the architecture of the regulatory system controlling methylenomycin production in Streptomyces coelicolor

Jack E. Bowyer, Emmanuel LC. de los Santos, Kathryn M. Styles, Alex Fullwood, Christophe Corre, Declan G. Bates

J Biol Eng. 2017; 11: 30. Published online 2017 Oct 3. doi: 10.1186/s13036-017-0071-6

PMCID:: PMC5625687

Article PDF–1.7M

Select item 524231411.

Computational Redesign of Thioredoxin Is Hypersensitive toward Minor Conformational Changes in the Backbone Template

Kristoffer E. Johansson, Nicolai Tidemand Johansen, Signe Christensen, Scott Horowitz, James C.A. Bardwell, Johan G. Olsen, Martin Willemoës, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Thomas Hamelryck, Jakob R. Winther

J Mol Biol. Author manuscript; available in PMC 2017 Apr 23.

Published in final edited form as: J Mol Biol. 2016 Oct 23; 428(21): 4361–4377. Published online 2016 Sep 20. doi: 10.1016/j.jmb.2016.09.013

PMCID:: PMC5242314

Article PDF–2.3M

Select item 513099212.

The Ecological Coherence of Temperature and Salinity Tolerance Interaction and Pigmentation in a Non-marine Vibrio Isolated from Salar de Atacama

Karem Gallardo, Jonathan E. Candia, Francisco Remonsellez, Lorena V. Escudero, Cecilia S. Demergasso

Front Microbiol. 2016; 7: 1943. Published online 2016 Dec 1. doi: 10.3389/fmicb.2016.01943

PMCID:: PMC5130992

Article PDF–4.3M

Select item 501652713.

Discovery, Molecular Mechanisms, and Industrial Applications of Cold-Active Enzymes

Margarita Santiago, César A. Ramírez-Sarmiento, Ricardo A. Zamora, Loreto P. Parra

Front Microbiol. 2016; 7: 1408. Published online 2016 Sep 9. doi: 10.3389/fmicb.2016.01408

PMCID:: PMC5016527

Article PDF–2.9M

Select item 491388114.

The bacterial DnaA-trio replication origin element specifies ssDNA initiator binding

Tomas T. Richardson, Omar Harran, Heath Murray

Nature. Author manuscript; available in PMC 2016 Dec 8.

Published in final edited form as: Nature. 2016 Jun 8; 534(7607): 412–416. Published online 2016 Jun 8. doi: 10.1038/nature17962

Correction in:: Nature. 2016 Jun 29; 536(7617): 488.

PMCID:: PMC4913881

Article PDF–3.9M

Select item 483147515.

Microvirga massiliensis sp. nov., the human commensal with the largest genome

Aurélia Caputo, Jean‐Christophe Lagier, Saïd Azza, Catherine Robert, Donia Mouelhi, Pierre‐Edouard Fournier, Didier Raoult

Microbiologyopen. 2016 Apr; 5(2): 307–322. Published online 2016 Jan 8. doi: 10.1002/mbo3.329

PMCID:: PMC4831475

Article PDF–460K

Select item 474057116.

Relationship between digital information and thermodynamic stability in bacterial genomes

Dawit Nigatu, Werner Henkel, Patrick Sobetzko, Georgi Muskhelishvili

EURASIP J Bioinform Syst Biol. 2016 Dec; 2016: 4. Published online 2016 Feb 2. doi: 10.1186/s13637-016-0037-x

PMCID:: PMC4740571

Article PDF–1.1M

Select item 458046317.

Designing and Implementing an Assay for the Detection of Rare and Divergent NRPS and PKS Clones in European, Antarctic and Cuban Soils

Gregory C. A. Amos, Chiara Borsetto, Paris Laskaris, Martin Krsek, Andrew E. Berry, Kevin K. Newsham, Leo Calvo-Bado, David A. Pearce, Carlos Vallin, Elizabeth M. H. Wellington

PLoS One. 2015; 10(9): e0138327. Published online 2015 Sep 23. doi: 10.1371/journal.pone.0138327

PMCID:: PMC4580463

Article PDF–579K

Select item 453779118.

Structuring microbial metabolic responses to multiplexed stimuli via self-organizing metabolomics maps

Cody R. Goodwin, Brett C. Covington, Dagmara K. Derewacz, C. Ruth McNees, John P. Wikswo, John A. McLean, Brian O. Bachmann

Chem Biol. Author manuscript; available in PMC 2016 May 21.

Published in final edited form as: Chem Biol. 2015 May 21; 22(5): 661–670. Published online 2015 Apr 30. doi: 10.1016/j.chembiol.2015.03.020

PMCID:: PMC4537791

Article PDF–1.5M

Select item 441300619.

Crystal structure of a putative transcriptional regulator SCO0520 from Streptomyces coelicolor A3(2) reveals an unusual dimer among TetR family proteins

Ekaterina V. Filippova, Maksymilian Chruszcz, Marcin Cymborowski, Jun Gu, Alexei Savchenko, Aled Edwards, Wladek Minor

J Struct Funct Genomics. Author manuscript; available in PMC 2015 Apr 29.

Published in final edited form as: J Struct Funct Genomics. 2011 Sep; 12(3): 149–157. Published online 2011 May 29. doi: 10.1007/s10969-011-9112-4

PMCID:: PMC4413006

Article PDF–1.4M

Select item 437550120.

Identification of a Fungal 1,8-Cineole Synthase from Hypoxylon sp. with Specificity Determinants in Common with the Plant Synthases

Jeffrey J. Shaw, Tetyana Berbasova, Tomoaki Sasaki, Kyra Jefferson-George, Daniel J. Spakowicz, Brian F. Dunican, Carolina E. Portero, Alexandra Narváez-Trujillo, Scott A. Strobel

J Biol Chem. 2015 Mar 27; 290(13): 8511–8526. Published online 2015 Feb 3. doi: 10.1074/jbc.M114.636159