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Select item 68429591.

Dispersant Enhances Hydrocarbon Degradation and Alters the Structure of Metabolically Active Microbial Communities in Shallow Seawater From the Northeastern Gulf of Mexico

Xiaoxu Sun, Lena Chu, Elisa Mercando, Isabel Romero, David Hollander, Joel E. Kostka

Front Microbiol. 2019; 10: 2387. Published online 2019 Oct 18. doi: 10.3389/fmicb.2019.02387

PMCID:: PMC6842959

Abstract Article PDF–2.1M

Select item 67943272.

Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae

Michaela M. Salcher, Daniel Schaefle, Melissa Kaspar, Stefan M. Neuenschwander, Rohit Ghai

ISME J. 2019 Nov; 13(11): 2764–2777. Published online 2019 Jul 10. doi: 10.1038/s41396-019-0471-3

PMCID:: PMC6794327

Abstract Article PDF–2.0M

Select item 66505493.

Synthetic Methane-Consuming Communities from a Natural Lake Sediment

Zheng Yu, Joseph Groom, Yue Zheng, Ludmila Chistoserdova, Jing Huang

mBio. 2019 Jul-Aug; 10(4): e01072-19. Published online 2019 Jul 23. doi: 10.1128/mBio.01072-19

PMCID:: PMC6650549

Abstract Article PDF–2.0M

Select item 63080024.

Compositional and Functional Shifts in the Epibiotic Bacterial Community of Shinkaia crosnieri Baba & Williams (a Squat Lobster from Hydrothermal Vents) during Methane-Fed Rearing

Tomo-o Watsuji, Kaori Motoki, Emi Hada, Yukiko Nagai, Yoshihiro Takaki, Asami Yamamoto, Kenji Ueda, Takashi Toyofuku, Hiroyuki Yamamoto, Ken Takai

Microbes Environ. 2018 Dec; 33(4): 348–356. Published online 2018 Oct 17. doi: 10.1264/jsme2.ME18072

PMCID:: PMC6308002

Abstract Article PDF–765K

Select item 58749185.

Physiological Effect of XoxG(4) on Lanthanide-Dependent Methanotrophy

Yue Zheng, Jing Huang, Feng Zhao, Ludmila Chistoserdova

mBio. 2018 Mar-Apr; 9(2): e02430-17. Published online 2018 Mar 27. doi: 10.1128/mBio.02430-17

PMCID:: PMC5874918

Abstract Article PDF–1.2M

Select item 57233206.

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption

Zheng Yu, David A. C. Beck, Ludmila Chistoserdova

Front Microbiol. 2017; 8: 2392. Published online 2017 Dec 5. doi: 10.3389/fmicb.2017.02392

PMCID:: PMC5723320

Abstract Article PDF–3.8M

Select item 55669687.

Comparative Genomic Analysis of Neutrophilic Iron(II) Oxidizer Genomes for Candidate Genes in Extracellular Electron Transfer

Shaomei He, Roman A. Barco, David Emerson, Eric E. Roden

Front Microbiol. 2017; 8: 1584. Published online 2017 Aug 21. doi: 10.3389/fmicb.2017.01584

PMCID:: PMC5566968

Abstract Article PDF–4.7M

Select item 53970458.

Biochemical and molecular characterization of the isocitrate dehydrogenase with dual coenzyme specificity from the obligate methylotroph Methylobacillus Flagellatus

Anastasia Y. Romkina, Michael Y. Kiriukhin

PLoS One. 2017; 12(4): e0176056. Published online 2017 Apr 19. doi: 10.1371/journal.pone.0176056

PMCID:: PMC5397045

Abstract Article PDF–3.2M

Select item 50232359.

C₁-Pathways in Methyloversatilis universalis FAM5: Genome Wide Gene Expression and Mutagenesis Studies

Nathan M. Good, Andrew Lamb, David A. C. Beck, N. Cecilia Martinez-Gomez, Marina G. Kalyuzhnaya

Microorganisms. 2015 Jun; 3(2): 175–197. Published online 2015 Apr 9. doi: 10.3390/microorganisms3020175

PMCID:: PMC5023235

Abstract Article PDF–979K

Select item 490885610.

A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?

Zheng Yu, Sascha M. B. Krause, David A. C. Beck, Ludmila Chistoserdova

Front Microbiol. 2016; 7: 946. Published online 2016 Jun 15. doi: 10.3389/fmicb.2016.00946

PMCID:: PMC4908856

Abstract Article PDF–914K

Select item 472527811.

Use of Substrate-Induced Gene Expression in Metagenomic Analysis of an Aromatic Hydrocarbon-Contaminated Soil

Matthew J. Meier, E. Suzanne Paterson, Iain B. Lambert

Appl Environ Microbiol. 2016 Feb 1; 82(3): 897–909. Prepublished online 2015 Nov 20. Published online 2016 Jan 22. doi: 10.1128/AEM.03306-15

PMCID:: PMC4725278

Abstract Article PDF–1.7M

Select item 467987112.

Esther Singer, Lauren S. Chong, John F. Heidelberg, Katrina J. Edwards

Front Microbiol. 2015; 6: 1409. Published online 2015 Dec 16. doi: 10.3389/fmicb.2015.01409

PMCID:: PMC4679871

Abstract Article PDF–2.1M

Select item 461150813.

The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign

Michaela M Salcher, Stefan M Neuenschwander, Thomas Posch, Jakob Pernthaler

ISME J. 2015 Nov; 9(11): 2442–2453. Published online 2015 May 5. doi: 10.1038/ismej.2015.55

PMCID:: PMC4611508

Abstract Article PDF–914K

Select item 461149714.

SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment

Özge Eyice, Motonobu Namura, Yin Chen, Andrew Mead, Siva Samavedam, Hendrik Schäfer

ISME J. 2015 Nov; 9(11): 2336–2348. Published online 2015 Mar 27. doi: 10.1038/ismej.2015.37

PMCID:: PMC4611497

Abstract Article PDF–2.1M

Select item 450734515.

An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria

Neus Sanchez-Alberola, Susana Campoy, David Emerson, Jordi Barbé, Ivan Erill

J Bacteriol. 2015 Aug; 197(16): 2622–2630. Prepublished online 2015 May 18. Published online 2016 Jul 17. doi: 10.1128/JB.00035-15

PMCID:: PMC4507345

Abstract Article PDF–1.6M

Select item 440915616.

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response

Igor Y Oshkin, David AC Beck, Andrew E Lamb, Veronika Tchesnokova, Gabrielle Benuska, Tami L McTaggart, Marina G Kalyuzhnaya, Svetlana N Dedysh, Mary E Lidstrom, Ludmila Chistoserdova

ISME J. 2015 May; 9(5): 1119–1129. Published online 2014 Oct 21. doi: 10.1038/ismej.2014.203

PMCID:: PMC4409156

Abstract Article PDF–741K

Select item 436429817.

The bypass of ZipA by overexpression of FtsN requires a previously unknown conserved FtsN motif essential for FtsA-FtsN interaction supporting a model in which FtsA monomers recruit late cell division proteins to the Z ring

Sebastien Pichoff, Shishen Du, Joe Lutkenhaus

Mol Microbiol. Author manuscript; available in PMC 2015 Apr 1.

Published in final edited form as: Mol Microbiol. 2015 Mar; 95(6): 971–987. Published online 2015 Feb 4. doi: 10.1111/mmi.12907

PMCID:: PMC4364298

Abstract Article PDF–2.2M

Select item 431960218.

Draft Genome Sequences of Five New Strains of Methylophilaceae Isolated from Lake Washington Sediment

Tami L. McTaggart, Gabrielle Benuska, Nicole Shapiro, Tanja Woyke, Ludmila Chistoserdova

Genome Announc. 2015 Jan-Feb; 3(1): e01511-14. Published online 2015 Feb 5. doi: 10.1128/genomeA.01511-14

PMCID:: PMC4319602

Abstract Article PDF–154K

Select item 410992919.

The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes

David A. C. Beck, Tami L. McTaggart, Usanisa Setboonsarng, Alexey Vorobev, Marina G. Kalyuzhnaya, Natalia Ivanova, Lynne Goodwin, Tanja Woyke, Mary E. Lidstrom, Ludmila Chistoserdova

PLoS One. 2014; 9(7): e102458. Published online 2014 Jul 24. doi: 10.1371/journal.pone.0102458