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Items: 1 to 20 of 39

1.
Transfer of skin microbiota between two dissimilar autologous microenvironments: A pilot study
Benji Perin, Amin Addetia, Xuan Qin
PLoS One. 2019; 14(12): e0226857. Published online 2019 Dec 30. doi: 10.1371/journal.pone.0226857
PMCID:
PMC6936845
ArticlePDF–1.4M
2.
Postmenopause as a key factor in the composition of the Endometrial Cancer Microbiome (ECbiome)
Dana M. Walsh, Alexis N. Hokenstad, Jun Chen, Jaeyun Sung, Gregory D. Jenkins, Nicholas Chia, Heidi Nelson, Andrea Mariani, Marina R. S. Walther-Antonio
Sci Rep. 2019; 9: 19213. Published online 2019 Dec 16. doi: 10.1038/s41598-019-55720-8
PMCID:
PMC6915778
ArticlePDF–3.4M
3.
SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines
Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel S. Brewer
Genome Biol. 2019; 20: 208. Published online 2019 Oct 22. doi: 10.1186/s13059-019-1819-8
PMCID:
PMC6805339
ArticlePDF–1.7M
4.
Varibaculum massiliense sp. nov., a new bacterium isolated from human urine with culturomics
E.H.A. Niang, C.I. Lo, S. Brahimi, N. Armstrong, D. Raoult, P.-E. Fournier, F. Fenollar
New Microbes New Infect. 2019 Nov; 32: 100591. Published online 2019 Sep 5. doi: 10.1016/j.nmni.2019.100591
PMCID:
PMC6796757
ArticlePDF–680K
5.
Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region
Maja Kosecka-Strojek, Artur J. Sabat, Viktoria Akkerboom, Karsten Becker, Evert van Zanten, Guido Wisselink, Jacek Miedzobrodzki, Anna M. D. (Mirjam) Kooistra-Smid, Alexander W. Friedrich
Front Cell Infect Microbiol. 2019; 9: 278. Published online 2019 Aug 7. doi: 10.3389/fcimb.2019.00278
PMCID:
PMC6698797
ArticlePDF–1.7M
6.
Arcanobacterium ihumii sp. nov., Varibaculum vaginae sp. nov. and Tessaracoccus timonensis sp. nov., isolated from vaginal swabs from healthy Senegalese women
N.S. Fall, C.I. Lo, P.-E. Fournier, C. Sokhna, D. Raoult, F. Fenollar, J.-C. Lagier
New Microbes New Infect. 2019 Sep; 31: 100585. Published online 2019 Jul 3. doi: 10.1016/j.nmni.2019.100585
Expression of Concern in:
New Microbes New Infect. 2024 Jun; 59: 101259.
PMCID:
PMC6656688
ArticlePDF–848K
7.
Varibaculum timonense sp. nov., a new bacterial species isolated from human stool sample
C.I. Lo, E.H.A. Niang, E. Guilhot, D. Raoult, P.-E. Fournier, F. Fenollar
New Microbes New Infect. 2019 Sep; 31: 100575. Published online 2019 Jun 13. doi: 10.1016/j.nmni.2019.100575
Expression of Concern in:
New Microbes New Infect. 2024 Jun; 59: 101409.
PMCID:
PMC6624321
ArticlePDF–706K
8.
The Human Microbiota and Prostate Cancer: Friend or Foe?
Francesco Massari, Veronica Mollica, Vincenzo Di Nunno, Lidia Gatto, Matteo Santoni, Marina Scarpelli, Alessia Cimadamore, Antonio Lopez-Beltran, Liang Cheng, Nicola Battelli, Rodolfo Montironi, Giovanni Brandi
Cancers (Basel) 2019 Apr; 11(4): 459. Published online 2019 Mar 31. doi: 10.3390/cancers11040459
PMCID:
PMC6521295
ArticlePDF–566K
9.
LytTR Regulatory Systems: A potential new class of prokaryotic sensory system
Zhengzhong Zou, Hua Qin, Amanda E. Brenner, Rahul Raghavan, Jess A. Millar, Qiang Gu, Zhoujie Xie, Jens Kreth, Justin Merritt
PLoS Genet. 2018 Oct; 14(10): e1007709. Published online 2018 Oct 8. doi: 10.1371/journal.pgen.1007709
PMCID:
PMC6193735
ArticlePDF–6.6M
10.
Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach
Matthew J Thoendel, Patricio R Jeraldo, Kerryl E Greenwood-Quaintance, Janet Z Yao, Nicholas Chia, Arlen D Hanssen, Matthew P Abdel, Robin Patel
Clin Infect Dis. 2018 Nov 1; 67(9): 1333–1338. Published online 2018 Apr 10. doi: 10.1093/cid/ciy303
PMCID:
PMC6186856
ArticlePDF–166K
11.
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
Imen Nouioui, Lorena Carro, Marina García-López, Jan P. Meier-Kolthoff, Tanja Woyke, Nikos C. Kyrpides, Rüdiger Pukall, Hans-Peter Klenk, Michael Goodfellow, Markus Göker
Front Microbiol. 2018; 9: 2007. Published online 2018 Aug 22. doi: 10.3389/fmicb.2018.02007
PMCID:
PMC6113628
ArticlePDF–5.3M
12.
Endocervical and vaginal microbiota in South African adolescents with asymptomatic Chlamydia trachomatis infection
Christina Balle, Katie Lennard, Smritee Dabee, Shaun L. Barnabas, Shameem Z. Jaumdally, Melanie A. Gasper, Venessa Maseko, Zizipho Z. A. Mbulawa, Anna-Lise Williamson, Linda-Gail Bekker, David A. Lewis, Jo-Ann S. Passmore, Heather B. Jaspan
Sci Rep. 2018; 8: 11109. Published online 2018 Jul 23. doi: 10.1038/s41598-018-29320-x
PMCID:
PMC6056523
ArticlePDF–1.7M
13.
Noncontiguous finished genome sequences and descriptions of Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea and Actinomyces oralis sp. nov. identified by culturomics
M.D. Mbogning Fonkou, M. Mailhe, S. Ndongo, D. Ricaboni, A. Morand, F. Cornu, M. Tidjani Alou, M. Bilen, C. Andrieu, A. Levasseur, F. Cadoret, D. Raoult
New Microbes New Infect. 2018 Sep; 25: 30–44. Published online 2018 Jun 18. doi: 10.1016/j.nmni.2018.06.004
Expression of Concern in:
New Microbes New Infect. 2024 Jun; 59: 101247.
PMCID:
PMC6036942
ArticlePDF–1.4M
14.
Profiling the Urinary Microbiome in Men with Positive versus Negative Biopsies for Prostate Cancer
Eva Shrestha, James R. White, Shu-Han Yu, Ibrahim Kulac, Onur Ertunc, Angelo M. De Marzo, Srinivasan Yegnasubramanian, Leslie A. Mangold, Alan W. Partin, Karen S. Sfanos
J Urol. Author manuscript; available in PMC 2018 May 7.
Published in final edited form as: J Urol. 2018 Jan; 199(1): 161–171. Published online 2017 Aug 7. doi: 10.1016/j.juro.2017.08.001
PMCID:
PMC5937117
ArticlePDF–1.1M
15.
Bacteriophages of the Urinary Microbiome
Taylor Miller-Ensminger, Andrea Garretto, Jonathon Brenner, Krystal Thomas-White, Adriano Zambom, Alan J. Wolfe, Catherine Putonti
J Bacteriol. 2018 Apr 1; 200(7): e00738-17. Prepublished online 2018 Jan 29. Published online 2018 Mar 12. doi: 10.1128/JB.00738-17
PMCID:
PMC5847656
ArticlePDF–742K
16.
Clinical metagenomics of bone and joint infections: a proof of concept study
Etienne Ruppé, Vladimir Lazarevic, Myriam Girard, William Mouton, Tristan Ferry, Frédéric Laurent, Jacques Schrenzel
Sci Rep. 2017; 7: 7718. Published online 2017 Aug 10. doi: 10.1038/s41598-017-07546-5
PMCID:
PMC5552814
ArticlePDF–3.6M
17.
Targeted next-generation sequencing of the 16S-23S rRNA region for culture-independent bacterial identification - increased discrimination of closely related species
Artur J. Sabat, Evert van Zanten, Viktoria Akkerboom, Guido Wisselink, Kees van Slochteren, Richard F. de Boer, Ron Hendrix, Alexander W. Friedrich, John W. A. Rossen, Anna M. D. (Mirjam) Kooistra-Smid
Sci Rep. 2017; 7: 3434. Published online 2017 Jun 13. doi: 10.1038/s41598-017-03458-6
PMCID:
PMC5469791
ArticlePDF–1.0M
18.
‘Prevotella ihumii’ sp. nov. and ‘Varibaculum timonense’ sp. nov., two new bacterial species isolated from a fresh human stool specimen
E. Guilhot, J.C. Lagier, D. Raoult, S. Khelaifia
New Microbes New Infect. 2017 Jul; 18: 3–5. Published online 2017 Mar 31. doi: 10.1016/j.nmni.2017.03.002
PMCID:
PMC5406518
ArticlePDF–518K
19.
“Varibaculum massiliense” sp. nov., a new bacterial species isolated from human urine
S.E.-H. Brahimi, S. Khelaifia, D. Raoult, V. Moal
New Microbes New Infect. 2016 Sep; 13: 75–76. Published online 2016 Jun 28. doi: 10.1016/j.nmni.2016.06.011
Expression of Concern in:
New Microbes New Infect. 2024 Jun; 59: 101408.
PMCID:
PMC4969209
ArticlePDF–203K
20.
One step closer to understanding the role of bacteria in diabetic foot ulcers: characterising the microbiome of ulcers
Karen Smith, Andrew Collier, Eleanor M. Townsend, Lindsay E. O’Donnell, Abhijit M. Bal, John Butcher, William G. Mackay, Gordon Ramage, Craig Williams
BMC Microbiol. 2016; 16: 54. Published online 2016 Mar 22. doi: 10.1186/s12866-016-0665-z
PMCID:
PMC4804642
ArticlePDF–828K

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