PMC Links for Taxonomy (Select 209880) - PMC

Select item 68682741.

Colibacter massiliensis gen. nov. sp. nov., a novel Gram-stain-positive anaerobic diplococcal bacterium, isolated from the human left colon

Hussein Anani, Rita Abou Abdallah, May Khoder, Anthony Fontanini, Morgane Mailhe, Davide Ricaboni, Didier Raoult, Pierre-Edouard Fournier

Sci Rep. 2019; 9: 17199. Published online 2019 Nov 20. doi: 10.1038/s41598-019-53791-1

PMCID:: PMC6868274

Abstract Article PDF–2.1M

Select item 61303522.

Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa

Pascale Vonaesch, Evan Morien, Lova Andrianonimiadana, Hugues Sanke, Jean-Robert Mbecko, Kelsey E. Huus, Tanteliniaina Naharimanananirina, Bolmbaye Privat Gondje, Synthia Nazita Nigatoloum, Sonia Sandrine Vondo, Jepthé Estimé Kaleb Kandou, Rindra Randremanana, Maheninasy Rakotondrainipiana, Florent Mazel, Serge Ghislain Djorie, Jean-Chrysostome Gody, B. Brett Finlay, Pierre-Alain Rubbo, Laura Wegener Parfrey, Jean-Marc Collard, Philippe J. Sansonetti, The Afribiota Investigators

Proc Natl Acad Sci U S A. 2018 Sep 4; 115(36): E8489–E8498. Published online 2018 Aug 20. doi: 10.1073/pnas.1806573115

PMCID:: PMC6130352

Abstract Article PDF–1.0M

Select item 61183263.

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri, Sinead C Leahy, Graeme T Attwood, Koon Hoong Teh, Suzanne C Lambie, Adrian L Cookson, Emiley A Eloe-Fadrosh, Georgios A Pavlopoulos, Michalis Hadjithomas, Neha J Varghese, David Paez-Espino, Hungate1000 project collaborators, Rechelle Perry, Gemma Henderson, Christopher J Creevey, Nicolas Terrapon, Pascal Lapebie, Elodie Drula, Vincent Lombard, Edward Rubin, Nikos C Kyrpides, Bernard Henrissat, Tanja Woyke, Natalia N Ivanova, William J Kelly

Nat Biotechnol. 2018; 36(4): 359–367. Published online 2018 Mar 19. doi: 10.1038/nbt.4110

PMCID:: PMC6118326

Abstract Article PDF–1.3M

Select item 59113774.

Does intra-ruminal nitrogen recycling waste valuable resources? A review of major players and their manipulation

Thomas Hartinger, Nina Gresner, Karl-Heinz Südekum

J Anim Sci Biotechnol. 2018; 9: 33. Published online 2018 Apr 22. doi: 10.1186/s40104-018-0249-x

PMCID:: PMC5911377

Abstract Article PDF–974K

Select item 50042285.

Non-alcoholic fatty liver and the gut microbiota

Stavros Bashiardes, Hagit Shapiro, Shachar Rozin, Oren Shibolet, Eran Elinav

Mol Metab. 2016 Sep; 5(9): 782–794. Published online 2016 Jun 14. doi: 10.1016/j.molmet.2016.06.003

PMCID:: PMC5004228

Abstract Article PDF–776K

Select item 42479546.

Ruminal Acidosis in Feedlot: From Aetiology to Prevention

Joaquín Hernández, José Luis Benedito, Angel Abuelo, Cristina Castillo

ScientificWorldJournal. 2014; 2014: 702572. Published online 2014 Nov 12. doi: 10.1155/2014/702572

PMCID:: PMC4247954

Abstract Article PDF–943K

Select item 42293277.

Determining the culturability of the rumen bacterial microbiome

Christopher J Creevey, William J Kelly, Gemma Henderson, Sinead C Leahy

Microb Biotechnol. 2014 Sep; 7(5): 467–479. Published online 2014 Jul 1. doi: 10.1111/1751-7915.12141

PMCID:: PMC4229327

Abstract Article PDF–1.4M

Select item 39894848.

Diet Alters Both the Structure and Taxonomy of the Ovine Gut Microbial Ecosystem

Melinda J. Ellison, Gavin C. Conant, Rebecca R. Cockrum, Kathy J. Austin, Huan Truong, Michela Becchi, William R. Lamberson, Kristi M. Cammack

DNA Res. 2014 Apr; 21(2): 115–125. Published online 2013 Oct 29. doi: 10.1093/dnares/dst044

PMCID:: PMC3989484

Abstract Article PDF–800K

Select item 38648119.

Alterations in the gut microbiota associated with HIV-1 infection

Catherine A. Lozupone, Marcella Li, Thomas B. Campbell, Sonia C. Flores, Derek Linderman, Matthew J. Gebert, Rob Knight, Andrew P. Fontenot, Brent E. Palmer

Cell Host Microbe. Author manuscript; available in PMC 2014 Sep 11.

Published in final edited form as: Cell Host Microbe. 2013 Sep 11; 14(3): 10.1016/j.chom.2013.08.006. doi: 10.1016/j.chom.2013.08.006

PMCID:: PMC3864811

Abstract Article PDF–1.4M

Select item 311645110.

A Persistent and Diverse Airway Microbiota Present during Chronic Obstructive Pulmonary Disease Exacerbations

Yvonne J. Huang, Eugenia Kim, Michael J. Cox, Eoin L. Brodie, Ron Brown, Jeanine P. Wiener-Kronish, Susan V. Lynch

OMICS. 2010 Feb; 14(1): 9–59. doi: 10.1089/omi.2009.0100

PMCID:: PMC3116451

Abstract Article PDF–501K

Select item 14363711.

Application of New Primer-Enzyme Combinations to Terminal Restriction Fragment Length Polymorphism Profiling of Bacterial Populations in Human Feces

Koji Nagashima, Takayoshi Hisada, Maremi Sato, Jun Mochizuki

Appl Environ Microbiol. 2003 Feb; 69(2): 1251–1262. doi: 10.1128/AEM.69.2.1251-1262.2003

PMCID:: PMC143637

Abstract Article PDF–300K

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