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Items: 1 to 20 of 30

1.
Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels
Jing Hou, Heping Zheng, Wen-Shyong Tzou, David R. Cooper, Maksymilian Chruszcz, Mahendra D. Chordia, Keehwan Kwon, Marek Grabowski, Wladek Minor
FEBS J. Author manuscript; available in PMC 2019 Aug 1.
Published in final edited form as: FEBS J. 2018 Aug; 285(15): 2900–2921. Published online 2018 Jun 30. doi: 10.1111/febs.14588
PMCID:
PMC6105497
AbstractArticlePDF–1.6M
2.
Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone
Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia
Proc Natl Acad Sci U S A. 2016 Dec 27; 113(52): 15018–15023. Published online 2016 Dec 13. doi: 10.1073/pnas.1611861114
PMCID:
PMC5206536
AbstractArticlePDF–1.0M
3.
The bacterial DnaA-trio replication origin element specifies ssDNA initiator binding
Tomas T. Richardson, Omar Harran, Heath Murray
Nature. Author manuscript; available in PMC 2016 Dec 8.
Published in final edited form as: Nature. 2016 Jun 8; 534(7607): 412–416. Published online 2016 Jun 8. doi: 10.1038/nature17962
Correction in:
Nature. 2016 Jun 29; 536(7617): 488.
PMCID:
PMC4913881
AbstractArticlePDF–3.9M
4.
Overexpression of a Cytosolic Pyrophosphatase (TgPPase) Reveals a Regulatory Role of Pyrophosphate in Glycolysis for Toxoplasma gondii
Douglas A. Pace, Jianmin Fang, Roxana Cintrón, Melissa D. Docampo, Silvia N. J. Moreno
Biochem J. Author manuscript; available in PMC 2016 May 20.
Published in final edited form as: Biochem J. 2011 Dec 1; 440(2): 229–240. doi: 10.1042/BJ20110641
PMCID:
PMC4874478
AbstractArticlePDF–3.7M
5.
Homozygous SLC6A17 Mutations Cause Autosomal-Recessive Intellectual Disability with Progressive Tremor, Speech Impairment, and Behavioral Problems
Zafar Iqbal, Marjolein H. Willemsen, Marie-Amélie Papon, Luciana Musante, Marco Benevento, Hao Hu, Hanka Venselaar, Willemijn M. Wissink-Lindhout, Anneke T. Vulto-van Silfhout, Lisenka E.L.M. Vissers, Arjan P.M. de Brouwer, Sylviane Marouillat, Thomas F. Wienker, Hans Hilger Ropers, Kimia Kahrizi, Nael Nadif Kasri, Hossein Najmabadi, Frédéric Laumonnier, Tjitske Kleefstra, Hans van Bokhoven
Am J Hum Genet. 2015 Mar 5; 96(3): 386–396. doi: 10.1016/j.ajhg.2015.01.010
PMCID:
PMC4375531
AbstractArticlePDF–2.1M
6.
Genome-wide gene order distances support clustering the gram-positive bacteria
Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon
Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785
PMCID:
PMC4299520
AbstractArticlePDF–8.7M
7.
Phylogenetic analysis and evolutionary origins of DNA polymerase X-family members
Rachelle J. Bienstock, William A. Beard, Samuel H. Wilson
DNA Repair (Amst) Author manuscript; available in PMC 2015 Oct 1.
Published in final edited form as: DNA Repair (Amst). 2014 Oct; 22: 77–88. Published online 2014 Aug 9. doi: 10.1016/j.dnarep.2014.07.003
PMCID:
PMC4260717
AbstractArticlePDF–1.9M
8.
Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane)
Gabriel Studer, Marco Biasini, Torsten Schwede
Bioinformatics. 2014 Sep 1; 30(17): i505–i511. Published online 2014 Aug 22. doi: 10.1093/bioinformatics/btu457
PMCID:
PMC4147910
AbstractArticlePDF–480K
9.
Genome-wide identification of pathogenicity factors of the free-living amoeba Naegleria fowleri
Denise C Zysset-Burri, Norbert Müller, Christian Beuret, Manfred Heller, Nadia Schürch, Bruno Gottstein, Matthias Wittwer
BMC Genomics. 2014; 15(1): 496. Published online 2014 Jun 19. doi: 10.1186/1471-2164-15-496
PMCID:
PMC4082629
AbstractArticlePDF–682K
10.
Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal
Sanjoy Kumar Saha, Aranyak Goswami, Chitra Dutta
BMC Genomics. 2014; 15(1): 430. Published online 2014 Jun 4. doi: 10.1186/1471-2164-15-430
PMCID:
PMC4070872
AbstractArticlePDF–2.6M
11.
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
Sergey Ovchinnikov, Hetunandan Kamisetty, David Baker
eLife. 2014; 3: e02030. Published online 2014 May 1. doi: 10.7554/eLife.02030
PMCID:
PMC4034769
AbstractArticlePDF–5.6M
12.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
AbstractArticlePDF–2.0M
13.
Argonaute protein as a linker to command center of physiological processes
Kaifa Wei, Lingjuan Wu, Yanhui Chen, Yina Lin, Yanmei Wang, Xiaoyao Liu, Daoxin Xie
Chin J Cancer Res. 2013 Aug; 25(4): 430–441. doi: 10.3978/j.issn.1000-9604.2013.08.13
PMCID:
PMC3752357
AbstractArticlePDF–1.3M
14.
The Structural Biology of Enzymes Involved in Natural Product Glycosylation
Shanteri Singh, George N. Phillips, Jr., Jon S. Thorson
Nat Prod Rep. Author manuscript; available in PMC 2013 Oct 12.
Published in final edited form as: Nat Prod Rep. 2012 Oct; 29(10): 1201–1237. Published online 2012 Jun 12. doi: 10.1039/c2np20039b
PMCID:
PMC3627186
AbstractArticlePDF–17M
15.
HD-RNAS: An Automated Hierarchical Database of RNA Structures
Shubhra Sankar Ray, Sukanya Halder, Stephanie Kaypee, Dhananjay Bhattacharyya
Front Genet. 2012; 3: 59. Published online 2012 Apr 18. doi: 10.3389/fgene.2012.00059
PMCID:
PMC3329738
AbstractArticlePDF–811K
16.
Novel base triples in RNA structures revealed by graph theoretical searching methods
Mohd Firdaus-Raih, Anne-Marie Harrison, Peter Willett, Peter J Artymiuk
BMC Bioinformatics. 2011; 12(Suppl 13): S2. Published online 2011 Nov 30. doi: 10.1186/1471-2105-12-S13-S2
PMCID:
PMC3278836
AbstractArticlePDF–1.3M
17.
A Universal Method for the Identification of Bacteria Based on General PCR Primers
Sameer A. Barghouthi
Indian J Microbiol. 2011 Oct; 51(4): 430–444. Published online 2011 Feb 19. doi: 10.1007/s12088-011-0122-5
PMCID:
PMC3209952
AbstractArticlePDF–1.8M
18.
A novel scoring function for discriminating hyperthermophilic and mesophilic proteins with application to predicting relative thermostability of protein mutants
Yunqi Li, C Russell Middaugh, Jianwen Fang
BMC Bioinformatics. 2010; 11: 62. Published online 2010 Jan 28. doi: 10.1186/1471-2105-11-62
PMCID:
PMC3098108
AbstractArticlePDF–1.3M
19.
Molecular evolution of urea amidolyase and urea carboxylase in fungi
Pooja K Strope, Kenneth W Nickerson, Steven D Harris, Etsuko N Moriyama
BMC Evol Biol. 2011; 11: 80. Published online 2011 Mar 29. doi: 10.1186/1471-2148-11-80
PMCID:
PMC3073912
AbstractArticlePDF–549K
20.
Distribution Analysis of Hydrogenases in Surface Waters of Marine and Freshwater Environments
Martin Barz, Christian Beimgraben, Torsten Staller, Frauke Germer, Friederike Opitz, Claudia Marquardt, Christoph Schwarz, Kirstin Gutekunst, Klaus Heinrich Vanselow, Ruth Schmitz, Julie LaRoche, Rüdiger Schulz, Jens Appel
PLoS One. 2010; 5(11): e13846. Published online 2010 Nov 5. doi: 10.1371/journal.pone.0013846
PMCID:
PMC2974642
AbstractArticlePDF–850K

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