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Items: 12

1.
GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data
Cuncong Zhong, Youngik Yang, Shibu Yooseph
BMC Bioinformatics. 2019; 20(Suppl 11): 276. Published online 2019 Jun 6. doi: 10.1186/s12859-019-2818-1
PMCID:
PMC6551247
ArticlePDF–1.0M
2.
GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly
Cuncong Zhong, Youngik Yang, Shibu Yooseph
BMC Bioinformatics. 2016; 17(Suppl 8): 283. Published online 2016 Aug 31. doi: 10.1186/s12859-016-1119-1
PMCID:
PMC5009819
ArticlePDF–798K
3.
GRASP: Guided Reference-based Assembly of Short Peptides
Cuncong Zhong, Youngik Yang, Shibu Yooseph
Nucleic Acids Res. 2015 Feb 18; 43(3): e18. Published online 2014 Nov 20. doi: 10.1093/nar/gku1210
PMCID:
PMC4330339
ArticlePDF–851K
4.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
ArticlePDF–2.0M
5.
Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage
Valérie de Crécy-Lagard, Farhad Forouhar, Céline Brochier-Armanet, Liang Tong, John F Hunt
Biol Direct. 2012; 7: 32. Published online 2012 Sep 26. doi: 10.1186/1745-6150-7-32
PMCID:
PMC3541065
ArticlePDF–2.4M
6.
Novel base triples in RNA structures revealed by graph theoretical searching methods
Mohd Firdaus-Raih, Anne-Marie Harrison, Peter Willett, Peter J Artymiuk
BMC Bioinformatics. 2011; 12(Suppl 13): S2. Published online 2011 Nov 30. doi: 10.1186/1471-2105-12-S13-S2
PMCID:
PMC3278836
ArticlePDF–1.3M
7.
Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A
Lars Rohlin, Robert P Gunsalus
BMC Microbiol. 2010; 10: 62. Published online 2010 Feb 23. doi: 10.1186/1471-2180-10-62
PMCID:
PMC2838876
ArticlePDF–1.6M
8.
Assessing the Quality of Whole Genome Alignments in Bacteria
Firas Swidan, Ron Shamir
Adv Bioinformatics. 2009; 2009: 749027. Published online 2009 Nov 15. doi: 10.1155/2009/749027
PMCID:
PMC2798158
ArticlePDF–608K
9.
Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization
Yan Zhang, Dmitry A Rodionov, Mikhail S Gelfand, Vadim N Gladyshev
BMC Genomics. 2009; 10: 78. Published online 2009 Feb 10. doi: 10.1186/1471-2164-10-78
PMCID:
PMC2667541
ArticlePDF–558K
10.
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic
Daniel H Haft, Ian T Paulsen, Naomi Ward, Jeremy D Selengut
BMC Biol. 2006; 4: 29. Published online 2006 Aug 24. doi: 10.1186/1741-7007-4-29
PMCID:
PMC1569441
ArticlePDF–414K
11.
Specific Detection of Dehalococcoides Species by Fluorescence In Situ Hybridization with 16S rRNA-Targeted Oligonucleotide Probes
Yanru Yang, Josef Zeyer
Appl Environ Microbiol. 2003 May; 69(5): 2879–2883. doi: 10.1128/AEM.69.5.2879-2883.2003
PMCID:
PMC154514
ArticlePDF–1.1M
12.
Identification of a Bacterium That Specifically Catalyzes the Reductive Dechlorination of Polychlorinated Biphenyls with Doubly Flanked Chlorines
Qingzhong Wu, Joy E. M. Watts, Kevin R. Sowers, Harold D. May
Appl Environ Microbiol. 2002 Feb; 68(2): 807–812. doi: 10.1128/AEM.68.2.807-812.2002
PMCID:
PMC126686
ArticlePDF–353K

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