PMC Links for Taxonomy (Select 381) - PMC

Shirley M. Halling, Brooke D. Peterson-Burch, Betsy J. Bricker, Richard L. Zuerner, Zhang Qing, Ling-Ling Li, Vivek Kapur, David P. Alt, Steven C. Olsen

J Bacteriol. 2005 Apr; 187(8): 2715–2726. doi: 10.1128/JB.187.8.2715-2726.2005

PMCID:: PMC1070361

Abstract Article PDF–161K

Select item 10653894.

Molecular and Biochemical Characterization of 2-Hydroxyisoflavanone Dehydratase. Involvement of Carboxylesterase-Like Proteins in Leguminous Isoflavone Biosynthesis

Tomoyoshi Akashi, Toshio Aoki, Shin-ichi Ayabe

Plant Physiol. 2005 Mar; 137(3): 882–891. doi: 10.1104/pp.104.056747

PMCID:: PMC1065389

Abstract Article PDF–193K

Select item 10652185.

The Presumptive Magnetosome Protein Mms16 Is a Poly(3-Hydroxybutyrate) Granule-Bound Protein (Phasin) in Magnetospirillum gryphiswaldense

Daniel Schultheiss, René Handrick, Dieter Jendrossek, Marianne Hanzlik, Dirk Schüler

J Bacteriol. 2005 Apr; 187(7): 2416–2425. doi: 10.1128/JB.187.7.2416-2425.2005

PMCID:: PMC1065218

Abstract Article PDF–586K

Select item 10651596.

Rhizobial 16S rRNA and dnaK Genes: Mosaicism and the Uncertain Phylogenetic Placement of Rhizobium galegae

B. D. Eardly, S. M. Nour, P. van Berkum, R. K. Selander

Appl Environ Microbiol. 2005 Mar; 71(3): 1328–1335. doi: 10.1128/AEM.71.3.1328-1335.2005

PMCID:: PMC1065159

Abstract Article PDF–323K

Select item 10651287.

Genomic Analysis of Bacteriophage ΦJL001: Insights into Its Interaction with a Sponge-Associated Alpha-Proteobacterium

Jayme E. Lohr, Feng Chen, Russell T. Hill

Appl Environ Microbiol. 2005 Mar; 71(3): 1598–1609. doi: 10.1128/AEM.71.3.1598-1609.2005

PMCID:: PMC1065128

Abstract Article PDF–697K

Select item 10651248.

Quantitative Molecular Assay for Fingerprinting Microbial Communities of Wastewater and Estrogen-Degrading Consortia

Chang-Ping Yu, Rajiv Ahuja, Gary Sayler, Kung-Hui Chu

Appl Environ Microbiol. 2005 Mar; 71(3): 1433–1444. doi: 10.1128/AEM.71.3.1433-1444.2005

PMCID:: PMC1065124

Abstract Article PDF–323K

Select item 5559429.

Gene fusions and gene duplications: relevance to genomic annotation and functional analysis

Margrethe H Serres, Monica Riley

BMC Genomics. 2005; 6: 33. Published online 2005 Mar 9. doi: 10.1186/1471-2164-6-33

PMCID:: PMC555942

Abstract Article PDF–374K

Select item 55411310.

Protein domains and architectural innovation in plant-associated Proteobacteria

David J Studholme, J Allan Downie, Gail M Preston

BMC Genomics. 2005; 6: 17. Published online 2005 Feb 16. doi: 10.1186/1471-2164-6-17

PMCID:: PMC554113

Abstract Article PDF–871K

Select item 55231411.

Clustering the annotation space of proteins

Victor Kunin, Christos A Ouzounis

BMC Bioinformatics. 2005; 6: 24. Published online 2005 Feb 9. doi: 10.1186/1471-2105-6-24

PMCID:: PMC552314

Abstract Article PDF–286K

Select item 55156612.

Prokaryotic phylogenies inferred from protein structural domains

Eric J. Deeds, Hooman Hennessey, Eugene I. Shakhnovich

Genome Res. 2005 Mar; 15(3): 393–402. doi: 10.1101/gr.3033805

PMCID:: PMC551566

Abstract Article PDF–252K

Select item 54943413.

Root-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicus

Ravisha R. Weerasinghe, David McK. Bird, Nina S. Allen

Proc Natl Acad Sci U S A. 2005 Feb 22; 102(8): 3147–3152. Published online 2005 Feb 14. doi: 10.1073/pnas.0407926102

PMCID:: PMC549434

Abstract Article PDF–517K

Select item 54943214.

Variation in the strength of selected codon usage bias among bacteria

Paul M. Sharp, Elizabeth Bailes, Russell J. Grocock, John F. Peden, R. Elizabeth Sockett

Nucleic Acids Res. 2005; 33(4): 1141–1153. Published online 2005 Feb 23. doi: 10.1093/nar/gki242

PMCID:: PMC549432

Abstract Article PDF–284K

Select item 54942015.

Relative predicted protein levels of functionally associated proteins are conserved across organisms

Gila Lithwick, Hanah Margalit

Nucleic Acids Res. 2005; 33(3): 1051–1057. Published online 2005 Feb 17. doi: 10.1093/nar/gki261

PMCID:: PMC549420

Abstract Article PDF–301K

Select item 54736816.

Gene Cassettes Potentially Encoding Fosfomycin Resistance Determinants

Sally R. Partridge, Ruth M. Hall

Antimicrob Agents Chemother. 2005 Feb; 49(2): 860–861. doi: 10.1128/AAC.49.2.860-861.2005

PMCID:: PMC547368

Article PDF–77K

Select item 54572417.

NopB, a Type III Secreted Protein of Rhizobium sp. Strain NGR234, Is Associated with Pilus-Like Surface Appendages

Maged M. Saad, Hajime Kobayashi, Corinne Marie, Ian R. Brown, John W. Mansfield, William J. Broughton, William J. Deakin

J Bacteriol. 2005 Feb; 187(3): 1173–1181. doi: 10.1128/JB.187.3.1173-1181.2005

PMCID:: PMC545724

Abstract Article PDF–437K

Select item 54562318.

Ectoine-Induced Proteins in Sinorhizobium meliloti Include an Ectoine ABC-Type Transporter Involved in Osmoprotection and Ectoine Catabolism

Mohamed Jebbar, Linda Sohn-Bösser, Erhard Bremer, Théophile Bernard, Carlos Blanco

J Bacteriol. 2005 Feb; 187(4): 1293–1304. doi: 10.1128/JB.187.4.1293-1304.2005

PMCID:: PMC545623

Abstract Article PDF–397K

Select item 54559719.

Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species

Michael W Rey, Preethi Ramaiya, Beth A Nelson, Shari D Brody-Karpin, Elizabeth J Zaretsky, Maria Tang, Alfredo Lopez de Leon, Henry Xiang, Veronica Gusti, Ib Groth Clausen, Peter B Olsen, Michael D Rasmussen, Jens T Andersen, Per L Jørgensen, Thomas S Larsen, Alexei Sorokin, Alexander Bolotin, Alla Lapidus, Nathalie Galleron, S Dusko Ehrlich, Randy M Berka

Genome Biol. 2004; 5(10): r77. Published online 2004 Sep 13. doi: 10.1186/gb-2004-5-10-r77

PMCID:: PMC545597

Abstract Article PDF–1.6M

Select item 54558620.

Genomic and proteomic adaptations to growth at high temperature

Donal A Hickey, Gregory AC Singer

Genome Biol. 2004; 5(10): 117. Published online 2004 Sep 30. doi: 10.1186/gb-2004-5-10-117

PMCID:: PMC545586

Abstract Article PDF–118K

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