PMC Links for Taxonomy (Select 59919) - PMC

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Items: 16

Select item 63239131.

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes

Lorna J Richardson, Neil D Rawlings, Gustavo A Salazar, Alexandre Almeida, David R Haft, Gregory Ducq, Granger G Sutton, Robert D Finn

Nucleic Acids Res. 2019 Jan 8; 47(Database issue): D564–D572. Published online 2018 Oct 26. doi: 10.1093/nar/gky1013

PMCID:: PMC6323913

Abstract Article PDF–2.6M

Select item 60705262.

High protein copy number is required to suppress stochasticity in the cyanobacterial circadian clock

Justin Chew, Eugene Leypunskiy, Jenny Lin, Arvind Murugan, Michael J. Rust

Nat Commun. 2018; 9: 3004. Published online 2018 Aug 1. doi: 10.1038/s41467-018-05109-4

PMCID:: PMC6070526

Abstract Article PDF–3.6M

Select item 60173793.

Reconstructing Phylogeny by Aligning Multiple Metabolic Pathways Using Functional Module Mapping

Yiran Huang, Cheng Zhong, Hai Xiang Lin, Jianyi Wang, Yuzhong Peng

Molecules. 2018 Feb; 23(2): 486. Published online 2018 Feb 23. doi: 10.3390/molecules23020486

PMCID:: PMC6017379

Abstract Article PDF–7.0M

Select item 57050194.

Algal light sensing and photoacclimation in aquatic environments

Deqiang Duanmu, Nathan C. Rockwell, J. Clark Lagarias

Plant Cell Environ. Author manuscript; available in PMC 2018 Nov 1.

Published in final edited form as: Plant Cell Environ. 2017 Nov; 40(11): 2558–2570. Published online 2017 May 11. doi: 10.1111/pce.12943

PMCID:: PMC5705019

Abstract Article PDF–549K

Select item 50638615.

A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus

Frances D. Pitt, Andrew Millard, Martin Ostrowski, Suat Dervish, Sophie Mazard, Ian T. Paulsen, Mikhail V. Zubkov, David J. Scanlan

Front Microbiol. 2016; 7: 1592. Published online 2016 Oct 14. doi: 10.3389/fmicb.2016.01592

PMCID:: PMC5063861

Abstract Article PDF–1.3M

Select item 50311346.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez

Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3

PMCID:: PMC5031134

Abstract Article PDF–5.2M

Select item 50253527.

Transformation-associated recombination (TAR) cloning for genomics studies and synthetic biology

Natalay Kouprina, Vladimir Larionov

Chromosoma. Author manuscript; available in PMC 2017 Sep 1.

Published in final edited form as: Chromosoma. 2016 Sep; 125(4): 621–632. Published online 2016 Apr 26. doi: 10.1007/s00412-016-0588-3

PMCID:: PMC5025352

Abstract Article PDF–959K

Select item 42995208.

Genome-wide gene order distances support clustering the gram-positive bacteria

Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon

Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785

PMCID:: PMC4299520

Abstract Article PDF–8.7M

Select item 42844629.

Function and Regulation of Ferredoxins in the Cyanobacterium, Synechocystis PCC6803: Recent Advances

Corinne Cassier-Chauvat, Franck Chauvat

Life (Basel) 2014 Dec; 4(4): 666–680. Published online 2014 Nov 7. doi: 10.3390/life4040666

PMCID:: PMC4284462

Abstract Article PDF–1.8M

Select item 309167810.

Computational analysis of LexA regulons in Cyanobacteria

Shan Li, Minli Xu, Zhengchang Su

BMC Genomics. 2010; 11: 527. Published online 2010 Sep 29. doi: 10.1186/1471-2164-11-527

PMCID:: PMC3091678

Abstract Article PDF–2.8M

Select item 297464211.

Distribution Analysis of Hydrogenases in Surface Waters of Marine and Freshwater Environments

Martin Barz, Christian Beimgraben, Torsten Staller, Frauke Germer, Friederike Opitz, Claudia Marquardt, Christoph Schwarz, Kirstin Gutekunst, Klaus Heinrich Vanselow, Ruth Schmitz, Julie LaRoche, Rüdiger Schulz, Jens Appel

PLoS One. 2010; 5(11): e13846. Published online 2010 Nov 5. doi: 10.1371/journal.pone.0013846

PMCID:: PMC2974642

Abstract Article PDF–850K

Select item 261419612.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Abstract Article PDF–498K

Select item 259614413.

Matching curated genome databases: a non trivial task

Stéphane Descorps-Declère, Matthieu Barba, Bernard Labedan

BMC Genomics. 2008; 9: 501. Published online 2008 Oct 24. doi: 10.1186/1471-2164-9-501

PMCID:: PMC2596144

Abstract Article PDF–555K

Select item 238680614.

Proteomics with a pinch of salt: A cyanobacterial perspective

Jagroop Pandhal, Phillip C Wright, Catherine A Biggs

Saline Syst. 2008; 4: 1. Published online 2008 Apr 15. doi: 10.1186/1746-1448-4-1

PMCID:: PMC2386806

Abstract Article PDF–509K

Select item 185231615.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 126270916.

Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes

A Krupa, N Srinivasan

BMC Genomics. 2005; 6: 129. Published online 2005 Sep 19. doi: 10.1186/1471-2164-6-129

PMCID:: PMC1262709

Abstract Article PDF–746K

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