PMC Links for Taxonomy (Select 674529) - PMC

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Select item 68650781.

Atti del 52° Congresso Nazionale: Società Italiana di Igiene, Medicina Preventiva e Sanità Pubblica (SItI)

J Prev Med Hyg. 2019 Oct; 60(3 Suppl 1): E1–E384. Published online 2019 Oct 15. doi: 10.15167/2421-4248/jpmh2019.60.3s1

PMCID:: PMC6865078

Article PDF–4.2M

Select item 68364772.

Application of MALDI-TOF MS to rapid identification of anaerobic bacteria

Ying Li, Mingzhu Shan, Zuobin Zhu, Xuhua Mao, Mingju Yan, Ying Chen, Qiuju Zhu, Hongchun Li, Bing Gu

BMC Infect Dis. 2019; 19: 941. Published online 2019 Nov 7. doi: 10.1186/s12879-019-4584-0

PMCID:: PMC6836477

Abstract Article PDF–1.5M

Select item 67679943.

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

Marina García-López, Jan P. Meier-Kolthoff, Brian J. Tindall, Sabine Gronow, Tanja Woyke, Nikos C. Kyrpides, Richard L. Hahnke, Markus Göker

Front Microbiol. 2019; 10: 2083. Published online 2019 Sep 23. doi: 10.3389/fmicb.2019.02083

PMCID:: PMC6767994

Abstract Article PDF–19M

Select item 66401184.

Can Targeting Non-Contiguous V-Regions With Paired-End Sequencing Improve 16S rRNA-Based Taxonomic Resolution of Microbiomes?: An In Silico Evaluation

Nishal Kumar Pinna, Anirban Dutta, Mohammed Monzoorul Haque, Sharmila S. Mande

Front Genet. 2019; 10: 653. Published online 2019 Jul 12. doi: 10.3389/fgene.2019.00653

PMCID:: PMC6640118

Abstract Article PDF–4.4M

Select item 66154325.

B-Vitamin Sharing Promotes Stability of Gut Microbial Communities

Vandana Sharma, Dmitry A. Rodionov, Semen A. Leyn, David Tran, Stanislav N. Iablokov, Hua Ding, Daniel A. Peterson, Andrei L. Osterman, Scott N. Peterson

Front Microbiol. 2019; 10: 1485. Published online 2019 Jul 2. doi: 10.3389/fmicb.2019.01485

PMCID:: PMC6615432

Abstract Article PDF–1.9M

Select item 65976926.

Genome sequence and description of Bacteroides bouchesdurhonensis sp. nov., a new anaerobic bacterium isolated from the human gut

S. Ndongo, M.L. Tall, I.I. Ngom, P.-E. Fournier, A. Levasseur, D. Raoult, S. Khelaifia

New Microbes New Infect. 2019 Sep; 31: 100571. Published online 2019 May 25. doi: 10.1016/j.nmni.2019.100571

Expression of Concern in:: New Microbes New Infect. 2024 Jun; 59: 101315.

PMCID:: PMC6597692

Abstract Article PDF–1020K

Select item 65943407.

A Comparative Analysis of Biosynthetic Gene Clusters in Lean and Obese Humans

Shengqin Wang, Na Li, Nan Li, Huixi Zou, Mingjiang Wu

Biomed Res Int. 2019; 2019: 6361320. Published online 2019 Jun 12. doi: 10.1155/2019/6361320

PMCID:: PMC6594340

Abstract Article PDF–1021K

Select item 63362678.

High throughput cultivation-based screening on porous aluminum oxide chips allows targeted isolation of antibiotic resistant human gut bacteria

Dennis Versluis, Teresita de J. Bello González, Erwin G. Zoetendal, Mark W. J. van Passel, Hauke Smidt

PLoS One. 2019; 14(1): e0210970. Published online 2019 Jan 17. doi: 10.1371/journal.pone.0210970

PMCID:: PMC6336267

Abstract Article PDF–804K

Select item 63145939.

Characterization of novel lignocellulose-degrading enzymes from the porcupine microbiome using synthetic metagenomics

Mackenzie Thornbury, Jacob Sicheri, Patrick Slaine, Landon J. Getz, Emma Finlayson-Trick, Jamie Cook, Caroline Guinard, Nicholas Boudreau, David Jakeman, John Rohde, Craig McCormick

PLoS One. 2019; 14(1): e0209221. Published online 2019 Jan 2. doi: 10.1371/journal.pone.0209221

PMCID:: PMC6314593

Abstract Article PDF–2.5M

Select item 626530910.

The Fecal Metagenomics of Malayan Pangolins Identifies an Extensive Adaptation to Myrmecophagy

Jing-E Ma, Hai-Ying Jiang, Lin-Miao Li, Xiu-Juan Zhang, Guan-Yu Li, Hui-Ming Li, Xue-Jun Jin, Jin-Ping Chen

Front Microbiol. 2018; 9: 2793. Published online 2018 Nov 23. doi: 10.3389/fmicb.2018.02793

PMCID:: PMC6265309

Abstract Article PDF–2.9M

Select item 613170511.

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

Melanie Schirmer, Eric A. Franzosa, Jason Lloyd-Price, Lauren J. McIver, Randall Schwager, Tiffany W. Poon, Ashwin N. Ananthakrishnan, Elizabeth Andrews, Gildardo Barron, Kathleen Lake, Mahadev Prasad, Jenny Sauk, Betsy Stevens, Robin G. Wilson, Jonathan Braun, Lee A. Denson, Subra Kugathasan, Dermot P.B. McGovern, Hera Vlamakis, Ramnik J. Xavier, Curtis Huttenhower

Nat Microbiol. Author manuscript; available in PMC 2018 Sep 11.

Published in final edited form as: Nat Microbiol. 2018 Mar; 3(3): 337–346. Published online 2018 Jan 8. doi: 10.1038/s41564-017-0089-z

PMCID:: PMC6131705

Abstract Article PDF–1.0M

Select item 597402212.

Combining amplicon sequencing and metabolomics in cirrhotic patients highlights distinctive microbiota features involved in bacterial translocation, systemic inflammation and hepatic encephalopathy

Valerio Iebba, Francesca Guerrieri, Vincenza Di Gregorio, Massimo Levrero, Antonella Gagliardi, Floriana Santangelo, Anatoly P. Sobolev, Simone Circi, Valerio Giannelli, Luisa Mannina, Serena Schippa, Manuela Merli

Sci Rep. 2018; 8: 8210. Published online 2018 May 29. doi: 10.1038/s41598-018-26509-y