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5430402O13Rik RIKEN cDNA 5430402O13 gene [ Mus musculus (house mouse) ]

Gene ID: 73183, updated on 22-Oct-2024

Summary

Official Symbol
5430402O13Rikprovided by MGI
Official Full Name
RIKEN cDNA 5430402O13 geneprovided by MGI
Primary source
MGI:MGI:1918631
See related
Ensembl:ENSMUSG00000085776 AllianceGenome:MGI:1918631
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3110047M22Rik
Expression
Ubiquitous expression in testis adult (RPKM 2.0), genital fat pad adult (RPKM 1.0) and 26 other tissues See more
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Genomic context

See 5430402O13Rik in Genome Data Viewer
Location:
6 B2.3; 6 24.32 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (50543623..50571845)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (50566643..50594865)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38806 Neighboring gene STARR-positive B cell enhancer mm9_chr6:50510920-50511221 Neighboring gene cytochrome c, somatic Neighboring gene microRNA 6371 Neighboring gene sperm microtubule inner protein 4 Neighboring gene STARR-positive B cell enhancer ABC_E3655 Neighboring gene predicted gene, 38807 Neighboring gene STARR-seq mESC enhancer starr_15852 Neighboring gene Crn, crooked neck-like 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015581.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC153386, AK017262, AK139045
    Related
    ENSMUST00000126537.5
  2. NR_027892.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon compared to variant 1.
    Source sequence(s)
    AK139045
    Related
    ENSMUST00000147260.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    50543623..50571845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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