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PTGFRN prostaglandin F2 receptor inhibitor [ Homo sapiens (human) ]

Gene ID: 5738, updated on 10-Dec-2024

Summary

Official Symbol
PTGFRNprovided by HGNC
Official Full Name
prostaglandin F2 receptor inhibitorprovided by HGNC
Primary source
HGNC:HGNC:9601
See related
Ensembl:ENSG00000134247 MIM:601204; AllianceGenome:HGNC:9601
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FPRP; CD315; EWI-F; CD9P-1; SMAP-6
Summary
Predicted to be involved in myoblast fusion involved in skeletal muscle regeneration. Predicted to act upstream of or within lipid droplet organization. Located in cell surface. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in heart (RPKM 21.3), endometrium (RPKM 18.0) and 24 other tissues See more
Orthologs
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Genomic context

See PTGFRN in Genome Data Viewer
Location:
1p13.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (116909916..116990353)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (116920364..117000790)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (117452538..117532975)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ferritin heavy chain 1 pseudogene 22 Neighboring gene Sharpr-MPRA regulatory region 9503 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:117363109-117363310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1575 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:117403141-117403881 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:117403882-117404621 Neighboring gene Sharpr-MPRA regulatory region 12934 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:117421310-117422509 Neighboring gene uncharacterized LOC105378927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:117481416-117481965 Neighboring gene MPRA-validated peak385 silencer Neighboring gene RNA, 5S ribosomal pseudogene 55 Neighboring gene Sharpr-MPRA regulatory region 2959 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:117532703-117533902 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:117560254-117561453 Neighboring gene uncharacterized LOC124904386 Neighboring gene CD101 molecule Neighboring gene CD101 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1578 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1236

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Envelope transmembrane glycoprotein gp41 env A synthetic peptide corresponding to the immunosuppressive domain (amino acids 574-592) of HIV-1 gp41 downregulates the expression of prostaglandin F2 receptor inhibitor (PTGFRN) in peptide-treated PBMCs PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

General gene information

Clone Names

  • FLJ11001, KIAA1436

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in Golgi apparatus  
located_in cell surface PubMed 
located_in endoplasmic reticulum membrane  
is_active_in membrane  

General protein information

Preferred Names
prostaglandin F2 receptor negative regulator
Names
CD9 partner 1
glu-Trp-Ile EWI motif-containing protein F
prostaglandin F2-alpha receptor regulatory protein
prostaglandin F2-alpha receptor-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020440.4NP_065173.2  prostaglandin F2 receptor negative regulator precursor

    See identical proteins and their annotated locations for NP_065173.2

    Status: VALIDATED

    Source sequence(s)
    AA045111, AB037857, AK074637, AL157904, DA572787
    Consensus CDS
    CCDS890.1
    UniProtKB/Swiss-Prot
    Q5VVU9, Q8N2K6, Q9P2B2
    UniProtKB/TrEMBL
    Q4QQP8
    Related
    ENSP00000376899.2, ENST00000393203.3
    Conserved Domains (3) summary
    smart00406
    Location:39121
    IGv; Immunoglobulin V-Type
    smart00410
    Location:30140
    IG_like; Immunoglobulin like
    cl11960
    Location:283376
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    116909916..116990353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001874.2XP_016857363.1  prostaglandin F2 receptor negative regulator isoform X1

    UniProtKB/TrEMBL
    Q4QQP8

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    116920364..117000790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054337811.1XP_054193786.1  prostaglandin F2 receptor negative regulator isoform X1

    UniProtKB/TrEMBL
    Q4QQP8
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