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    1700063D05Rik RIKEN cDNA 1700063D05 gene [ Mus musculus (house mouse) ]

    Gene ID: 78500, updated on 22-Oct-2024

    Summary

    Official Symbol
    1700063D05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700063D05 geneprovided by MGI
    Primary source
    MGI:MGI:1925750
    See related
    Ensembl:ENSMUSG00000100837 AllianceGenome:MGI:1925750
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 6.5), cerebellum adult (RPKM 2.5) and 2 other tissues See more
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    Genomic context

    See 1700063D05Rik in Genome Data Viewer
    Location:
    9 A5.1; 9 22.47 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (41117451..41128923)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (41206155..41217627)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 3-like Neighboring gene predicted gene, 35657 Neighboring gene STARR-seq mESC enhancer starr_23877 Neighboring gene STARR-seq mESC enhancer starr_23879 Neighboring gene STARR-seq mESC enhancer starr_23880 Neighboring gene VISTA enhancer mm1486 Neighboring gene predicted gene, 25401 Neighboring gene Mir100 Mirlet7a-2 Mir125b-1 cluster host gene Neighboring gene STARR-seq mESC enhancer starr_23882 Neighboring gene microRNA 100

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040392.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156031, AK018871, CJ056044
      Related
      ENSMUST00000185590.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      41117451..41128923
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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