U.S. flag

An official website of the United States government

Lysmd4 LysM, putative peptidoglycan-binding, domain containing 4 [ Mus musculus (house mouse) ]

Gene ID: 75099, updated on 9-Dec-2024

Summary

Official Symbol
Lysmd4provided by MGI
Official Full Name
LysM, putative peptidoglycan-binding, domain containing 4provided by MGI
Primary source
MGI:MGI:1922349
See related
Ensembl:ENSMUSG00000043831 AllianceGenome:MGI:1922349
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930506D23Rik
Summary
Predicted to be located in membrane. Is expressed in cranial ganglion and dorsal root ganglion. Orthologous to human LYSMD4 (LysM domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in CNS E18 (RPKM 8.6), whole brain E14.5 (RPKM 7.5) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Lysmd4 in Genome Data Viewer
Location:
7 C; 7 36.71 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (66872292..66878216)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (67222544..67228468)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 17 Neighboring gene Y box protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_19094 Neighboring gene RIKEN cDNA 1700112J16 gene Neighboring gene STARR-positive B cell enhancer ABC_E4933 Neighboring gene STARR-seq mESC enhancer starr_19095 Neighboring gene myocyte enhancer factor 2A Neighboring gene STARR-seq mESC enhancer starr_19096 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:74557695-74557804 Neighboring gene STARR-positive B cell enhancer ABC_E3725 Neighboring gene predicted gene, 51462

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component  
located_in membrane  

General protein information

Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 4

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191051.1NP_001177980.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform A

    See identical proteins and their annotated locations for NP_001177980.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (A) encodes isoform A. Both variants A and B encode the same protein.
    Source sequence(s)
    AC158751, AK033681, AK143241
    Consensus CDS
    CCDS21350.1
    UniProtKB/Swiss-Prot
    Q6PFQ8, Q8CC84
    Related
    ENSMUSP00000146557.2, ENSMUST00000208998.2
    Conserved Domains (1) summary
    smart00257
    Location:77115
    LysM; Lysin motif
  2. NM_001357962.1NP_001344891.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform C

    Status: VALIDATED

    Description
    Transcript Variant: This variant (C) encodes isoform C. Variants C, D and E encode the same protein.
    Source sequence(s)
    AC158751, CD774408
    Consensus CDS
    CCDS90251.1
    UniProtKB/TrEMBL
    A0A140LI06, A0A140LIK8
    Related
    ENSMUSP00000146624.2, ENSMUST00000208698.2
  3. NM_001357963.1NP_001344892.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform C

    Status: VALIDATED

    Description
    Transcript Variant: This variant (D) encodes isoform C. Variants C, D and E encode the same protein.
    Source sequence(s)
    AC158751
    Consensus CDS
    CCDS90251.1
    UniProtKB/TrEMBL
    A0A140LI06, A0A140LIK8
    Related
    ENSMUSP00000147179.2, ENSMUST00000207823.2
  4. NM_001357964.1NP_001344893.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform C

    Status: VALIDATED

    Description
    Transcript Variant: This variant (E) encodes isoform C. Variants C, D and E encode the same protein.
    Source sequence(s)
    AC158751
    Consensus CDS
    CCDS90251.1
    UniProtKB/TrEMBL
    A0A140LI06, A0A140LIK8
    Related
    ENSMUSP00000136151.3, ENSMUST00000179106.3
  5. NM_175215.4NP_780424.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform A

    See identical proteins and their annotated locations for NP_780424.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (B) differs in the 5' UTR compared to variant A. Both variants A and B encode the same protein.
    Source sequence(s)
    AC158751, AK033681
    Consensus CDS
    CCDS21350.1
    UniProtKB/Swiss-Prot
    Q6PFQ8, Q8CC84
    Related
    ENSMUSP00000053341.6, ENSMUST00000058771.13
    Conserved Domains (1) summary
    smart00257
    Location:77115
    LysM; Lysin motif

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    66872292..66878216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243046.1XP_030098906.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A140LHI0, A0A140LIK8
    Related
    ENSMUSP00000146421.2, ENSMUST00000208213.2
  2. XM_030243045.2XP_030098905.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2

  3. XM_006541236.4XP_006541299.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

External link. Please review our privacy policy.