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    Muc17 mucin 17, cell surface associated [ Mus musculus (house mouse) ]

    Gene ID: 666339, updated on 9-Dec-2024

    Summary

    Official Symbol
    Muc17provided by MGI
    Official Full Name
    mucin 17, cell surface associatedprovided by MGI
    Primary source
    MGI:MGI:1203527
    See related
    Ensembl:ENSMUSG00000037390 AllianceGenome:MGI:1203527
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Muc3
    Summary
    Predicted to enable PDZ domain binding activity. Located in apical plasma membrane and microvillus. Is expressed in bladder; gut; hindgut; testis; and ureter. Orthologous to human MUC17 (mucin 17, cell surface associated). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in colon adult (RPKM 3121.3), small intestine adult (RPKM 1038.7) and 2 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Muc17 in Genome Data Viewer
    Location:
    5 G2; 5 76.22 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137163772..137202809, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137134924..137166048, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene serine (or cysteine) peptidase inhibitor, clade E, member 1 Neighboring gene STARR-seq mESC enhancer starr_14636 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:137579031-137579214 Neighboring gene tripartite motif-containing 56 Neighboring gene predicted gene, 40348 Neighboring gene predicted gene, 31160 Neighboring gene peptidyl-prolyl cis-trans isomerase G-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in apical plasma membrane PubMed 
    located_in apical plasma membrane  
    located_in external side of plasma membrane  
    located_in microvillus PubMed 

    General protein information

    Preferred Names
    mucin-17
    Names
    mucin 3, intestinal

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010843.2NP_034973.2  mucin-17 precursor

      Status: VALIDATED

      Source sequence(s)
      AC242397, MG954266
      UniProtKB/TrEMBL
      E9PWP7
      Related
      ENSMUSP00000045196.11, ENSMUST00000041226.11
      Conserved Domains (1) summary
      smart00200
      Location:41854296
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      137163772..137202809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036165418.1XP_036021311.1  mucin-17 isoform X7

      Conserved Domains (1) summary
      smart00200
      Location:37173828
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    2. XM_036165414.1XP_036021307.1  mucin-17 isoform X3

      Conserved Domains (1) summary
      smart00200
      Location:37653876
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    3. XM_036165421.1XP_036021314.1  mucin-17 isoform X10

      Conserved Domains (1) summary
      smart00200
      Location:36933804
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    4. XM_036165416.1XP_036021309.1  mucin-17 isoform X5

      Conserved Domains (1) summary
      smart00200
      Location:37413852
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    5. XM_036165422.1XP_036021315.1  mucin-17 isoform X11

      Conserved Domains (1) summary
      smart00200
      Location:36813792
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    6. XM_036165415.1XP_036021308.1  mucin-17 isoform X4

      Conserved Domains (1) summary
      smart00200
      Location:37593870
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    7. XM_036165420.1XP_036021313.1  mucin-17 isoform X9

      Conserved Domains (1) summary
      smart00200
      Location:37113822
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    8. XM_036165424.1XP_036021317.1  mucin-17 isoform X13

      Conserved Domains (1) summary
      smart00200
      Location:33923503
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    9. XM_036165425.1XP_036021318.1  mucin-17 isoform X14

      Conserved Domains (1) summary
      smart00200
      Location:33563467
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    10. XM_036165417.1XP_036021310.1  mucin-17 isoform X6

      Conserved Domains (1) summary
      smart00200
      Location:37413852
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    11. XM_036165412.1XP_036021305.1  mucin-17 isoform X1

      Conserved Domains (1) summary
      smart00200
      Location:37893900
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    12. XM_036165423.1XP_036021316.1  mucin-17 isoform X12

      Conserved Domains (1) summary
      smart00200
      Location:35793690
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    13. XM_036165413.1XP_036021306.1  mucin-17 isoform X2

      Conserved Domains (1) summary
      smart00200
      Location:37893900
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    14. XM_036165427.1XP_036021320.1  mucin-17 isoform X16

      Conserved Domains (1) summary
      smart00200
      Location:22882399
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    15. XM_036165426.1XP_036021319.1  mucin-17 isoform X15

      Conserved Domains (1) summary
      smart00200
      Location:32363347
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    16. XM_036165419.1XP_036021312.1  mucin-17 isoform X8

      Conserved Domains (1) summary
      smart00200
      Location:37113822
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
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