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    CSD2 copper/zinc superoxide dismutase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817365, updated on 18-Sep-2024

    Summary

    Official Symbol
    CSD2
    Official Full Name
    copper/zinc superoxide dismutase 2
    Primary source
    TAIR:AT2G28190
    Locus tag
    AT2G28190
    See related
    Araport:AT2G28190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSOD2; COPPER/ZINC SUPEROXIDE DISMUTASE; copper/zinc superoxide dismutase 2; COPPER/ZINC SUPEROXIDE DISMUTASE 2; CZSOD2; F24D13.2; F24D13_2; SOD2; superoxide dismutase 2
    Summary
    Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Activation depends totally on CCS. Overexpression of a miR398-resistant form of CSD2 leads to more dramatic improvements in stress (hight light, Cu2+ and methyl viologen) tolerance than overexpression of wild-type CSD2.
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    Genomic context

    See CSD2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (12014412..12016569)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cation/hydrogen exchanger family protein Neighboring gene ncRNA Neighboring gene cation/hydrogen exchanger family protein Neighboring gene C2H2-type zinc finger family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_128379.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding  
    enables superoxide dismutase activity PubMed 
    enables superoxide dismutase activity  

    General protein information

    Preferred Names
    copper/zinc superoxide dismutase 2
    NP_565666.1
    • copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12014412..12016569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128379.4NP_565666.1  copper/zinc superoxide dismutase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565666.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O78310, Q0WUQ0, Q541D5, Q9SUJ7, Q9SUJ8
      UniProtKB/TrEMBL
      A0A178VRV1, A0A5S9X1Z4, A0A7G2ECD5
      Conserved Domains (1) summary
      cl00891
      Location:66213
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
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