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Submitted SNP(ss) Details: ss116422552           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000013_NCBI36.1_chr5_79366
RefSNP(rs#)rs11744553
Submitted Batch IDILLUMINA_WTSI:NA18507_c5
Submitted DateJan 17, 2009
Publication Cited18987734
First entry to dbSNPJan 17 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss116422552|allelePos=251|len=501|taxid=9606|alleles='G/C'|mol=Genomic
 TCACCATCGG ATGCCCCACG ATCCTACTCT CAGGGTGTTC GTATGCCATA TGCCATGTTC
 ACAAATCTGT AAAAAAAAAA AAAAGTTACA ATTATGAAAT TAAAAGTTAA CTAAAGGAGG
 ATGTTTTCAT TATCTTTGAA ATTTAACCCC CCAAATCCAG ATTATAAAGC AAGGAGATGT
 CTTATGGCCC AACACTTGCC ATTGATACTT TTTCGATGTT AGTGGGCAGG GGAGGGTAGT
 GAAAGTAAAG
 S
 AATCAGAGCT CCGATGGGTG CACATTGTCT TCCCTACAAA TCCATTTCTT GTCCAGCCTT
 CCTTCCTCAT TGGGGCTGCT CTATCTTTTT CTGCGCATTT GAACTGCTCC CCTGTGGGCC
 ATTCTCATTT GCTTTACTTC CTTGTCTGAA TTCCATGGGA CCTGCATTTA AGAGGAGAGA
 GGAACCACTT TGGGACTGGA GGAAGTTCAC CTTATGCCAT ATGCCTGCCT CCTTCCTCTA
 CAGTGAACAG

  Submitted Frequency for ss116422552 back to top
There is no frequency submission for ss116422552.


  dbSNP summary of Genotypes for ss116422552 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.69999999
C=0.30000001C/G=0.46666667
G/G=0.46666667
C/C=0.06666667
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.89999998
C=0.10000000G/G=0.80000001
C/G=0.20000000
Pr(chiSq=0.106,df=1)
=0.752
Genotype
Freq.
HapMap-JPT8888G=0.90909094
C=0.09090909G/G=0.84090906
C/G=0.13636364
C/C=0.02272727
Pr(chiSq=1.347,df=1)
=0.251
Genotype
Freq.
HapMap-YRI120120G=0.77499998
C=0.22499999G/G=0.58333331
C/G=0.38333333
C/C=0.03333334
Pr(chiSq=0.590,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss116422552 back to top
There is no individual genotype data for ss116422552.

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