NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss116422593           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000029_NCBI36.1_chr5_89236
RefSNP(rs#)rs73016588
Submitted Batch IDILLUMINA_WTSI:NA18507_c5
Submitted DateJan 17, 2009
Publication Cited18987734
First entry to dbSNPJan 17 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss116422593|allelePos=251|len=501|taxid=9606|alleles='C/A'|mol=Genomic
 CTGCAGGTTC TGCTCCTGTA TCCCAGAATT TAAAGTATTA AAAAAAATAT AAAAGTCACA
 GGATGTTTGT GATAGTATCT GTTACGCTGA TGCTGCCATC ACATGGTTGA CTATGTGGAG
 ACTCCAAGTG AAATTTCTTG CAGTTCTCGG TGGCAGGAAA ATCTGTATTT CTGGATAAAA
 CTAAAAAAGT TTAGAAAAAC ATTCAAGTTT CATAGTCTAG AGCTCTAACA CTGGAATCTT
 TTCCAAATTT
 M
 AGGTTTAATG ATTTACCTAA ATCTAAAAAT AGTAGGTTGC AGATGTATTT AAACAGTGTG
 CCTAGGTAGT ATGTTTATAT ATTAGGATTA AAATGGCCTT CTAAAGTCTA CTAATTCTAA
 TATAGCCTTT ATTGTTTCAT GTAGACATAT CTTTCCGATT CCCAGGATAA TTTAAACAAT
 TAATTCAAAG CAACTATTGA CTTAGTTCTA GATTGGGATA TCTATTTATG CATTTGAAGC
 TTTAGATATG

  Submitted Frequency for ss116422593 back to top
There is no frequency submission for ss116422593.


  dbSNP summary of Genotypes for ss116422593 back to top
No sufficient data to compute Hardy-weinberg probability for ss116422593.


  Submitted individual genotype for ss116422593 back to top
There is no individual genotype data for ss116422593.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement