Submitted SNP(ss) Details: ss117555067

Submitted SNP(ss) Details: ss117555067

Submitter
Handle	ILLUMINA-UK
Submitter SNP ID	NA18507_000000019_NCBI36.1_chr2_8674
RefSNP(rs#)	rs10195681
Submitted Batch ID	ILLUMINA_WTSI:NA18507_c2
Submitted Date	Jan 19, 2009
Publication Cited	18987734
First entry to dbSNP	Jan 19 2009 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	NA18507_000000019_NCBI36.1_chr2_8674

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	ILLUMINA SEQUENCING
Ascertainment Samplesize	2
Population	YRI

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 11
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCCATACAGT GCGGGGTCAC AGCTGAATTC CCCAAGATAC CTTGCAGGAT GTCGGCTTCT
 GAACTTTCAG GTGTCTTCCA GGTGAAGGCT TGGTCTCATA GCCTTTGTGG CTTCCTCCAG
 GTAACACTTG GTTTTTTGAC CTAACCCTGG TATTTGTGTG GCACACGTGT GAATGTGTGA
 ATGTGCTCCC TGTGGCAGTG CTGAGGAAGG GCTCAGTCAT CACAGATGCG AAAAGGCAGT
 GTGCTCTTTT
 M
 CAACATCTCC AGTCTTGTAT TATTTTTACC CATCAGCCCA TTTAAAAAAG AAACACAAAA
 AGCCTCCTGT TAGAATTAAA TCCCCTCTGA AGATAATGGG TATTTTTAAA ATCTTTAATT
 TTGTTTATAG TCACATTTGC TCCCAGTGCC TGCCAGGATC CACTAGAGGG CAGAGACACC
 CGTGTGTATT TGGCTGGGTC TCACTCCTGA GAGAGGAGAC CTTCCTCTGG ACCAGGTACC
 AAGACAGACC

Submitted Frequency for ss117555067

There is no frequency submission for ss117555067.

dbSNP summary of Genotypes for ss117555067

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	216	216	C=0.97685188	A=0.02314815	C/C=0.95370370 A/C=0.04629629	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	90	90	C=0.98888886	A=0.01111111	C/C=0.97777778 A/C=0.02222222	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HapMap-JPT	90	90	C=0.98888886	A=0.01111111	C/C=0.97777778 A/C=0.02222222	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HapMap-YRI	220	220	C=0.88636363	A=0.11363637	C/C=0.80000001 A/C=0.17272727 A/A=0.02727273	Pr(chiSq=2.236,df=1) =0.150	Genotype Freq.
HAPMAP-ASW	94	94	C=0.90425533	A=0.09574468	C/C=0.82978725 A/C=0.14893617 A/A=0.02127660	Pr(chiSq=0.919,df=1) =0.343	Genotype Freq.
HAPMAP-CHD	170	170	C=0.93529409	A=0.06470589	C/C=0.88235295 A/C=0.10588235 A/A=0.01176471	Pr(chiSq=1.333,df=1) =0.251	Genotype Freq.
HAPMAP-GIH	172	172	C=0.98837209	A=0.01162791	C/C=0.97674417 A/C=0.02325581	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	98	98	C=0.92857140	A=0.07142857	C/C=0.87755102 A/C=0.10204082 A/A=0.02040816	Pr(chiSq=2.609,df=1) =0.150	Genotype Freq.
HAPMAP-MKK	280	280	C=0.89642859	A=0.10357143	C/C=0.80714285 A/C=0.17857143 A/A=0.01428571	Pr(chiSq=0.206,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss117555067

There is no individual genotype data for ss117555067.

Disclaimer Privacy statement