NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss118438222           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000027_NCBI36.1_chr1_744197
RefSNP(rs#)rs3131967
Submitted Batch IDILLUMINA_WTSI:NA18507_c1
Submitted DateJan 21, 2009
Publication Cited18987734
First entry to dbSNPJan 21 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss118438222|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CCTGCATTCA TCTCTCTAGG GCAACGTCGG CTGCAGCTGA GATGGCTGCT CCCCGGTGGG
 GTGTGTGCTC GGCCTGCAGT CCCCGCCCTC CGGACTCCAT TCGCCTCCAC TCTCAGGTTT
 GCACCTCGTC ATTGTCTTCT AATTTTGCAT CCCTGGACTG CGTGACCTAC AAGGCTCTCA
 GCACAACAAG ACTCTATGAT TCTGTCTATT GGAACAAAAA GCCAGTGAGG CAAGTGTATC
 ATCCTGTTGA
 Y
 GAATTCACAG CATTAACTCT GGGAGTTGGG GACAGTGTGT ATTCTTCCTC CAGACACTCT
 CTGTTTCTCC TGGATGGAAA GGTTCTGCTA CTTGTCCCGT GGTCAGGCCC AGCCAATGGA
 ACGGAATGGA AGTGACTCTG CCCCTTATTG GCAGAAACTT TAAAAGCCGC ACAACGTTCC
 TGCACCCTCC CCTCTGCCAT GAGCCTGGCA GTGCTCAGGA TGGGAAAATT ATCTCACCTG
 GGCCTGAGGA

  Submitted Frequency for ss118438222 back to top
There is no frequency submission for ss118438222.


  dbSNP summary of Genotypes for ss118438222 back to top
No sufficient data to compute Hardy-weinberg probability for ss118438222.


  Submitted individual genotype for ss118438222 back to top
There is no individual genotype data for ss118438222.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement