Submitted SNP(ss) Details: ss12724200

Submitted SNP(ss) Details: ss12724200

Submitter
Handle	EGP_SNPS
Submitter SNP ID	IGFBP2-000933
RefSNP(rs#)	rs9341090
Submitted Batch ID	IGFBP2-PDR90-100703
Submitted Date	Oct 08, 2003
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Oct 8 2003 12:00:00:000AM

Resource Links
GenBank Accession	AY398667
Submitted Gene Name	IGFBP2
Submitted Gene ID	3485
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	154
Population	PDR90

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 7
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACATCACCTC TCTACCAAAA TATTTCTTTT CTTCAAAGCC TCTGATAAAC atttatttat
 ttatttttta tCTTACCAAA GTCTTTCCCG ATAACTCTTC CCAGCTTGGC GTCTTAAGAC
 CAGGAACTTG CCTTCCTGGA GGCATCTAGG TCACCTTCAG AGCCAGGTGG CCATTGGGTT
 AACTAGCTGT TGAACTGAAT CAAACAGGCT CTGAGCCTTG AAGTCAGAAA GAGCCAGAGT
 GGAGGGGTCT GGGGG
 R
 AAGAGGGGCG CTGAGGTATA GGGAGATGAA ACCTGCGGTG GAGGCAGCTT AATGGTCCAC
 CTGTCACCCA AGGAATCTCT CTGACAGGGG TCTTTGTTAG GGTCACACCC CAGGAGATGG
 TTGATTATGG CTGAGTCCAG CCTGGAATGA TGGGGGTTGG GGGCAGCTTG GGTAGATGAC
 TCAGTAAATC AAACAGAACA ATGAAAGGAG GTCATGCTTG TCCATCTGCA TTATTGAAGA
 CAGCCATAAA TGGCC

Submitted Frequency for ss12724200

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
PDR90	154	G=0.81168801	A=0.18831199	0.306 +/-0.056	IGFBP2-PDR90-100703	EGP_SNPS
CEPH-TRIOS	606	G=0.68000001	A=0.31999999		.3	CEPH
COHORT_CONSORTIUM_C - EUROPE	76	G=0.84722000	A=0.15278000		.4	CEPH
COHORT_CONSORTIUM_J - EAST ASIA	76	G=0.98649001	A=0.01351000		.4	CEPH
COHORT_CONSORTIUM_L - CENTRAL/SOUTH AMERICA	76	G=0.88889003	A=0.11111000		.4	CEPH
COHORT_CONSORTIUM_B - NORTH AMERICA	76	G=0.77778000	A=0.22222000		.4	CEPH
COHORT_CONSORTIUM_H - CENTRAL/SOUTH AMERICA	76	G=0.95946002	A=0.04054000		.4	CEPH

dbSNP summary of Genotypes for ss12724200

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	154	154	G=0.81168830	A=0.18831168	G/G=0.66233766 A/G=0.29870129 A/A=0.03896104	Pr(chiSq=0.040,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss12724200

There is no individual genotype data for ss12724200.

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