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Submitted SNP(ss) Details: ss12724203           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-001263
RefSNP(rs#)rs9341093
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724203|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 ATCTCTCTGA CAGGGGTCTT TGTTAGGGTC ACACCCCAGG AGATGGTTGA TTATGGCTGA
 GTCCAGCCTG GAATGATGGG GGTTGGGGGC AGCTTGGGTA GATGACTCAG TAAATCAAAC
 AGAACAATGA AAGGAGGTCA TGCTTGTCCA TCTGCATTAT TGAAGACAGC CATAAATGGC
 CTTACCCCAG AGCGGGTCTG TCACACCTGG AGAGCTGATC TGACCTCTCC AAGACCCCTG
 CAACTGAGTG TTCTG
 R
 GATCTGTCCT GCAACAAGTG CCTCGAGATT TGTAGGTGGG GGCCCAGGGT GCTAAGGGAT
 TATTTTAGCG GGCGGAGAAG GGAGGGGGTC TGCAGACGAA GGGGGCAGGT TTTGCGGGGC
 ACTTAGGGTT CTCATAGGTT GTAGTCACGA GCTCCCAGGT TTGGAAAACT GCAATAGTCA
 CTAAGACCAT TCGGGGCTGT TTGGGTCTAG CTTGGTCTAG ACGGGTCTGA AACTCCGCAG
 GACCCACCCA ACAAG

  Submitted Frequency for ss12724203 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90160G=0.98124999
A=0.01875000
0.037 +/-0.029IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724203 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90160160G=0.98124999
A=0.01875000G/G=0.96249998
A/G=0.03750000
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724203 back to top
There is no individual genotype data for ss12724203.

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