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Submitted SNP(ss) Details: ss12724204           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-001696
RefSNP(rs#)rs9341094
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize170
PopulationPDR90
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724204|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 TCACTAAGAC CATTCGGGGC TGTTTGGGTC TAGCTTGGTC TAGACGGGTC TGAAACTCCG
 CAGGACCCAC CCAACAAGAA GTCATTGTTC CAAGCCACGT GTCAGTGGTG GGTGATACCC
 CAGGATGGAA GGAGTTGGTA TGAGCCGACT GAAATCTACT TGAAGGTCAA AACGGAGCCT
 TATGTCTTTT GTGTTCCCCA GCGGTTAGCC CAGTGCCGGC CACAGGGGAA GCGCGCAAAC
 GAAGTCCTCG CGAAC
 W
 GAACTGAGAG CAGACAAAAG CACGCGCTCT TCTCCACCGC CACGCCGGTC CTACCCAAAC
 CCGCGAGTTA TCCGTATTCT CCTTCAGGAG TCATAGTCAG GCCAGAAGAG TGCGGAGGGA
 CGGGGCCCGG GAAGAGCAGG GAACCCCCAG AGCCCGCAGC CAACGCGGAG GTGGGCGAGC
 GGGCGTGCGC GCACTCACTT GCCGGCGCGA GGGAGTGTCG GGGGGGAAGG GAGTGGTCTC
 CAAAAGGGGG AGGGG

  Submitted Frequency for ss12724204 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90170T=0.99411798
A=0.00588200
0.012 +/-0.016IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724204 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90170170T=0.99411762
A=0.00588235T/T=0.98823529
A/T=0.01176471
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724204 back to top
There is no individual genotype data for ss12724204.

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