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Submitted SNP(ss) Details: ss12724205           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-001833
RefSNP(rs#)rs9341095
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724205|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GTATGAGCCG ACTGAAATCT ACTTGAAGGT CAAAACGGAG CCTTATGTCT TTTGTGTTCC
 CCAGCGGTTA GCCCAGTGCC GGCCACAGGG GAAGCGCGCA AACGAAGTCC TCGCGAACTG
 AACTGAGAGC AGACAAAAGC ACGCGCTCTT CTCCACCGCC ACGCCGGTCC TACCCAAACC
 CGCGAGTTAT CCGTATTCTC CTTCAGGAGT CATAGTCAGG CCAGAAGAGT GCGGAGGGAC
 GGGGCCCGGG AAGAG
 Y
 AGGGAACCCC CAGAGCCCGC AGCCAACGCG GAGGTGGGCG AGCGGGCGTG CGCGCACTCA
 CTTGCCGGCG CGAGGGAGTG TCGGGGGGGA AGGGAGTGGT CTCCAAAAGG GGGAGGGGAG
 AAGGCAGGGG GCGGGGAGAA GCCGGCCCTT TAGGACCCGG CTGCGGCGGC GAGGGAGGAG
 GAAGAAGCGG AGGAGGCGGC TCCCGCGCTC GCAGGGCCGT Gccacctgcc cgcccgcccg
 ctcgctcgct cgccc

  Submitted Frequency for ss12724205 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90160C=0.99374998
T=0.00625000
0.012 +/-0.017IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724205 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90160160C=0.99374998
T=0.00625000C/C=0.98750001
C/T=0.01250000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724205 back to top
There is no individual genotype data for ss12724205.

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