NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12724206           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-002533
RefSNP(rs#)rs9341096
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724206|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 CCTGCGGGCC CCCGCCGGTT GCGCCGCCCG CCGCGGTGGC CGCAGTGGCC GGAGGCGCCC
 GCATGCCATG CGCGGAGCTC GTCCGGGAGC CGGGCTGCGG CTGCTGCTCG GTGTGCGCCC
 GGCTGGAGGG CGAGGCGTGC GGCGTCTACA CCCCGCGCTG CGGCCAGGGG CTGCGCTGCT
 ATCCCCACCC GGGCTCCGAG CTGCCCCTGC AGGCGCTGGT CATGGGCGAG GGCACTTGTG
 AGAAGCGCCG GGACG
 M
 CGAGTATGGC GCCAGCCCGG AGCAGGTTGC AGGTAACGCG GTCTGGAACA AGTAGTTGGG
 AGAAACTTGG AGGGCAGCGG AGAAGCCCGA CGGGCGGCTG GACCTTACGG ACGGTTTTAG
 GGGCGGCAGA GCCGAGACCT TGGACCAAAT CAAGGGGGAC TGTTGCTAGC GGGACGCGGA
 AGTCAGGCCC GGGGAGGGGA ACTGGAGTTA GAGCAAGTGG AAGAGCCCTG GCGACTCATT
 TGGTGGGGAT GAATG

  Submitted Frequency for ss12724206 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90172C=0.99418598
A=0.00581400
0.012 +/-0.016IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724206 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90172172C=0.99418604
A=0.00581395C/C=0.98837209
A/C=0.01162791
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724206 back to top
There is no individual genotype data for ss12724206.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement