Submitted SNP(ss) Details: ss12724207

Submitted SNP(ss) Details: ss12724207

Submitter
Handle	EGP_SNPS
Submitter SNP ID	IGFBP2-002716
RefSNP(rs#)	rs3770473
Submitted Batch ID	IGFBP2-PDR90-100703
Submitted Date	Oct 08, 2003
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Oct 8 2003 12:00:00:000AM

Resource Links
GenBank Accession	AY398667
Submitted Gene Name	IGFBP2
Submitted Gene ID	3485
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	126
Population	PDR90

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 6
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCCACCCGGG CTCCGAGCTG CCCCTGCAGG CGCTGGTCAT GGGCGAGGGC ACTTGTGAGA
 AGCGCCGGGA CGCCGAGTAT GGCGCCAGCC CGGAGCAGGT TGCAGGTAAC GCGGTCTGGA
 ACAAGTAGTT GGGAGAAACT TGGAGGGCAG CGGAGAAGCC CGACGGGCGG CTGGACCTTA
 CGGACGGTTT TAGGGGCGGC AGAGCCGAGA CCTTGGACCA AATCAAGGGG GACTGTTGCT
 AGCGGGACGC GGAAG
 K
 CAGGCCCGGG GAGGGGAACT GGAGTTAGAG CAAGTGGAAG AGCCCTGGCG ACTCATTTGG
 TGGGGATGAA TGGGGAGAGG AAAGGCATCC CTGCTGCCAT AGTTTTACCC GCGTGGAACG
 GACCCAGACT TCTATTCTGG AGGAGGGATT TGCTGAGAAG GGGGCCGGTG GTCAGATCCA
 TGGGAGTAGG AACTCGAATC TTATTTGGGG CACTGCTTGA GGACCCAAGG GTCCTGGTGG
 GATCGCTGCT GGGAG

Submitted Frequency for ss12724207

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
PDR90	126	T=0.72222197	G=0.27777800	0.401 +/-0.050	IGFBP2-PDR90-100703	EGP_SNPS
COHORT_CONSORTIUM_L - CENTRAL/SOUTH AMERICA	76	T=0.57894701	G=0.42105299		CEPH-BATCHNG14.4	CEPH
COHORT_CONSORTIUM_C - EUROPE	76	T=0.61111099	G=0.38888901		CEPH-BATCHNG14.4	CEPH
COHORT_CONSORTIUM_B - NORTH AMERICA	76	T=0.72973001	G=0.27026999		CEPH-BATCHNG14.4	CEPH
COHORT_CONSORTIUM_H - CENTRAL/SOUTH AMERICA	76	T=0.66216201	G=0.33783799		CEPH-BATCHNG14.4	CEPH
COHORT_CONSORTIUM_J - EAST ASIA	76	T=0.51351398	G=0.48648599		CEPH-BATCHNG14.4	CEPH

dbSNP summary of Genotypes for ss12724207

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	126	126	T=0.72222221	G=0.27777779	T/T=0.53968257 G/T=0.36507937 G/G=0.09523810	Pr(chiSq=0.512,df=1) =0.479	Genotype Freq.
HapMap-CEU	114	114	T=0.71929824	G=0.28070176	T/T=0.50877196 G/T=0.42105263 G/G=0.07017544	Pr(chiSq=0.104,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss12724207

There is no individual genotype data for ss12724207.

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