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Submitted SNP(ss) Details: ss12724208           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-002827
RefSNP(rs#)rs9341097
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize150
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724208|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CGGTCTGGAA CAAGTAGTTG GGAGAAACTT GGAGGGCAGC GGAGAAGCCC GACGGGCGGC
 TGGACCTTAC GGACGGTTTT AGGGGCGGCA GAGCCGAGAC CTTGGACCAA ATCAAGGGGG
 ACTGTTGCTA GCGGGACGCG GAAGTCAGGC CCGGGGAGGG GAACTGGAGT TAGAGCAAGT
 GGAAGAGCCC TGGCGACTCA TTTGGTGGGG ATGAATGGGG AGAGGAAAGG CATCCCTGCT
 GCCATAGTTT TACCC
 R
 CGTGGAACGG ACCCAGACTT CTATTCTGGA GGAGGGATTT GCTGAGAAGG GGGCCGGTGG
 TCAGATCCAT GGGAGTAGGA ACTCGAATCT TATTTGGGGC ACTGCTTGAG GACCCAAGGG
 TCCTGGTGGG ATCGCTGCTG GGAGGCGGAG GCTGCGGGGT GCCAGTGACA CCAGGAACCT
 TGGAAGAGGA GAGGGAGCTA GGAGGAGGCA CCGGCGTCCC AAGGGGCCCT TCCTTCTACT
 GGGGTTGTGA GTTGG

  Submitted Frequency for ss12724208 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90150G=0.99333298
A=0.00666700
0.013 +/-0.019IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724208 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90150150G=0.99333334
A=0.00666667G/G=0.98666668
A/G=0.01333333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724208 back to top
There is no individual genotype data for ss12724208.

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