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Submitted SNP(ss) Details: ss12724209           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-002932
RefSNP(rs#)rs9341098
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize146
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724209|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 ACCAAATCAA GGGGGACTGT TGCTAGCGGG ACGCGGAAGT CAGGCCCGGG GAGGGGAACT
 GGAGTTAGAG CAAGTGGAAG AGCCCTGGCG ACTCATTTGG TGGGGATGAA TGGGGAGAGG
 AAAGGCATCC CTGCTGCCAT AGTTTTACCC GCGTGGAACG GACCCAGACT TCTATTCTGG
 AGGAGGGATT TGCTGAGAAG GGGGCCGGTG GTCAGATCCA TGGGAGTAGG AACTCGAATC
 TTATTTGGGG CACTG
 M
 TTGAGGACCC AAGGGTCCTG GTGGGATCGC TGCTGGGAGG CGGAGGCTGC GGGGTGCCAG
 TGACACCAGG AACCTTGGAA GAGGAGAGGG AGCTAGGAGG AGGCACCGGC GTCCCAAGGG
 GCCCTTCCTT CTACTGGGGT TGTGAGTTGG AAAGAAAGGA CTTGGTACTT TGTAGGATGA
 GTCGCTTAGG AGAAAAATGA AAACCAACAC TACTATTTCT CCATAGGGAA CGAGCAGGGC
 TCTTGCTACC ACGTT

  Submitted Frequency for ss12724209 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90146C=0.99315101
A=0.00684900
0.014 +/-0.019IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724209 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90146146C=0.99315071
A=0.00684932C/C=0.98630136
A/C=0.01369863
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724209 back to top
There is no individual genotype data for ss12724209.

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