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Submitted SNP(ss) Details: ss12724210           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-003026
RefSNP(rs#)rs4674105
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize126
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724210|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 ATTTGGTGGG GATGAATGGG GAGAGGAAAG GCATCCCTGC TGCCATAGTT TTACCCGCGT
 GGAACGGACC CAGACTTCTA TTCTGGAGGA GGGATTTGCT GAGAAGGGGG CCGGTGGTCA
 GATCCATGGG AGTAGGAACT CGAATCTTAT TTGGGGCACT GCTTGAGGAC CCAAGGGTCC
 TGGTGGGATC GCTGCTGGGA GGCGGAGGCT GCGGGGTGCC AGTGACACCA GGAACCTTGG
 AAGAGGAGAG GGAGC
 Y
 AGGAGGAGGC ACCGGCGTCC CAAGGGGCCC TTCCTTCTAC TGGGGTTGTG AGTTGGAAAG
 AAAGGACTTG GTACTTTGTA GGATGAGTCG CTTAGGAGAA AAATGAAAAC CAACACTACT
 ATTTCTCCAT AGGGAACGAG CAGGGCTCTT GCTACCACGT TGAATGGAAA AATAAAAGGG
 AGGCATTTGG TAGGCGAGGG GTCTCCTAGC AGCTGAATCA ATGTAACTTA AGCCCGATCG
 CCGGCTGCAT TCCCT

  Submitted Frequency for ss12724210 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90126T=0.67460299
C=0.32539701
0.439 +/-0.041IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724210 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90126126T=0.67460316
C=0.32539684T/T=0.47619048
C/T=0.39682540
C/C=0.12698413
Pr(chiSq=0.582,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss12724210 back to top
There is no individual genotype data for ss12724210.

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