NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12724211           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-003988
RefSNP(rs#)rs869564
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724211|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CTCCTGGTCG GCTATTGTTT TTTTCCCTGT TCTCCTTGAG AATGGAATTA GGGGTCAGAG
 TTGAAATCTT TCTTCTGTTT CTCTAGCACA TTTTGCTCTG GAGTACAGAG CAAGTTAGGG
 CTTCCTCTGA GTGGAGCCTC TCAGTCCCTT TCTTCTCCCT CGGCTCGCTT CCTTCCCTAG
 CCTGCCTGGA AGTTAACCCT TCCCTCCTGC TTCTCTTAGA AAGTAACAAT AAAAGGAAAA
 AGCCCCCACG AAATC
 Y
 TTTCACTGCG GGGTGCCTGT CCCCCAGTCA TGCGTTCCTC CTCATCACCC CTCGTGGTCC
 ACCGGGGAGG TGCTGTGCAG TTTCTGAGCT GAACTCTGAC AAACTAAACA TCTTCCTCAG
 CAGGGTGAAC TTTTTGAAAG GCCTCTAAGT TCATAGGATG GTTTGGCTGC TGACTGTTTT
 AATAAAGTGT GTGATGCCTT TCCTTCTTTA ACGTTTTACT TTTTTTTTTT CCTACTCTTC
 ATTCGTCTTA TTCTA

  Submitted Frequency for ss12724211 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90158C=0.84177202
T=0.15822800
0.266 +/-0.056IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724211 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90158158C=0.84177214
T=0.15822785C/C=0.69620252
C/T=0.29113925
T/T=0.01265823
Pr(chiSq=0.682,df=1)
=0.439
Genotype
Freq.

  Submitted individual genotype for ss12724211 back to top
There is no individual genotype data for ss12724211.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement