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Submitted SNP(ss) Details: ss12724212           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-004059
RefSNP(rs#)rs9341099
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724212|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 CTTCTGTTTC TCTAGCACAT TTTGCTCTGG AGTACAGAGC AAGTTAGGGC TTCCTCTGAG
 TGGAGCCTCT CAGTCCCTTT CTTCTCCCTC GGCTCGCTTC CTTCCCTAGC CTGCCTGGAA
 GTTAACCCTT CCCTCCTGCT TCTCTTAGAA AGTAACAATA AAAGGAAAAA GCCCCCACGA
 AATCCTTTCA CTGCGGGGTG CCTGTCCCCC AGTCATGCGT TCCTCCTCAT CACCCCTCGT
 GGTCCACCGG GGAGG
 W
 GCTGTGCAGT TTCTGAGCTG AACTCTGACA AACTAAACAT CTTCCTCAGC AGGGTGAACT
 TTTTGAAAGG CCTCTAAGTT CATAGGATGG TTTGGCTGCT GACTGTTTTA ATAAAGTGTG
 TGATGCCTTT CCTTCTTTAA CGTTTTACTT TTTTTTTTTC CTACTCTTCA TTCGTCTTAT
 TCTAAGCCTG AAAACCAATT CTACTTCCCA AATCCCTGAA GCCGGTTAGG GTCTTTAGCC
 AGGAACAGAT GCGGC

  Submitted Frequency for ss12724212 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90162T=0.98765397
A=0.01234600
0.024 +/-0.024IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724212 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90162162T=0.98765433
A=0.01234568T/T=0.97530866
A/T=0.02469136
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724212 back to top
There is no individual genotype data for ss12724212.

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