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Submitted SNP(ss) Details: ss12724213           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-004254
RefSNP(rs#)rs9341100
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724213|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 GGGTGCCTGT CCCCCAGTCA TGCGTTCCTC CTCATCACCC CTCGTGGTCC ACCGGGGAGG
 TGCTGTGCAG TTTCTGAGCT GAACTCTGAC AAACTAAACA TCTTCCTCAG CAGGGTGAAC
 TTTTTGAAAG GCCTCTAAGT TCATAGGATG GTTTGGCTGC TGACTGTTTT AATAAAGTGT
 GTGATGCCTT TCCTTCTTTA ACGTTTTACT TTTTTTTTTT CCTACTCTTC ATTCGTCTTA
 TTCTAAGCCT GAAAA
 S
 CAATTCTACT TCCCAAATCC CTGAAGCCGG TTAGGGTCTT TAGCCAGGAA CAGATGCGGC
 AGATTTTCTC CCATTCACTT TTCCCTGGAG CCTGAAGGGG GTGGGGGGTA GTTGTCAGGG
 GAGGCCAGGG ACAATGGGGT GAGTTCATGG GAAGAATGTC ACTCTGGATT TTCTGCCTGG
 TTATGGGACT CCCTTCCGCC AGCTTGCCCC AGCTGCGTTC TCCTCCCCAG TGCCCAGACG
 CCTTCCGCAT TTTTG

  Submitted Frequency for ss12724213 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90158C=0.98734200
G=0.01265800
0.025 +/-0.025IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724213 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90158158C=0.98734176
G=0.01265823C/C=0.97468352
C/G=0.02531646
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12724213 back to top
There is no individual genotype data for ss12724213.

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