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Submitted SNP(ss) Details: ss12724215           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-004516
RefSNP(rs#)rs9341102
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724215|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TACTTCCCAA ATCCCTGAAG CCGGTTAGGG TCTTTAGCCA GGAACAGATG CGGCAGATTT
 TCTCCCATTC ACTTTTCCCT GGAGCCTGAA GGGGGTGGGG GGTAGTTGTC AGGGGAGGCC
 AGGGACAATG GGGTGAGTTC ATGGGAAGAA TGTCACTCTG GATTTTCTGC CTGGTTATGG
 GACTCCCTTC CGCCAGCTTG CCCCAGCTGC GTTCTCCTCC CCAGTGCCCA GACGCCTTCC
 GCATTTTTGT GCACC
 R
 GCCTGGGAAG AGGGGATGTT AAGCAGGGGT GGAAGGTGGG GGGTGGGGCT GGAAGCTGAG
 TGGGTGCACT CAAAAGAAGT GACCAATGTC AGGGGTGCCT GAGAAAGAGT CGGGCTGGGG
 GAGGGGAGCA CTTTGGGAAG GAGCCTGAGC TTGCAAGGGT GCAGGAGAAA AAGGGGTCAA
 GGTTGGAGGC TTTTGTGTGG GAGAGGGTCT TAGGCTGGGG CAGAGACTGG AGTCACTGGA
 TGGAGAGTGC TGGGT

  Submitted Frequency for ss12724215 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90160G=0.82499999
A=0.17500000
0.289 +/-0.055IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724215 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90160160G=0.82499999
A=0.17500000G/G=0.68750000
A/G=0.27500001
A/A=0.03750000
Pr(chiSq=0.181,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss12724215 back to top
There is no individual genotype data for ss12724215.

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