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Submitted SNP(ss) Details: ss12724217           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-004627
RefSNP(rs#)rs9341104
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724217|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GGGGAGGCCA GGGACAATGG GGTGAGTTCA TGGGAAGAAT GTCACTCTGG ATTTTCTGCC
 TGGTTATGGG ACTCCCTTCC GCCAGCTTGC CCCAGCTGCG TTCTCCTCCC CAGTGCCCAG
 ACGCCTTCCG CATTTTTGTG CACCGGCCTG GGAAGAGGGG ATGTTAAGCA GGGGTGGAAG
 GTGGGGGGTG GGGCTGGAAG CTGAGTGGGT GCACTCAAAA GAAGTGACCA ATGTCAGGGG
 TGCCTGAGAA AGAGT
 M
 GGGCTGGGGG AGGGGAGCAC TTTGGGAAGG AGCCTGAGCT TGCAAGGGTG CAGGAGAAAA
 AGGGGTCAAG GTTGGAGGCT TTTGTGTGGG AGAGGGTCTT AGGCTGGGGC AGAGACTGGA
 GTCACTGGAT GGAGAGTGCT GGGTCCGAGT TGGGTGGGGC CTGGCCCAGA CGGAGATCTT
 AGCACTGAAT CCTCTGCCTC CCACTCCATC TCCCGTCCCG TCTTCTCTCC TCTCCGAAGA
 ATGAGCACCC CCCCT

  Submitted Frequency for ss12724217 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90160C=0.99374998
A=0.00625000
0.012 +/-0.017IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724217 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90160160C=0.99374998
A=0.00625000C/C=0.98750001
A/C=0.01250000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724217 back to top
There is no individual genotype data for ss12724217.

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