Submitted SNP(ss) Details: ss12724218

Submitted SNP(ss) Details: ss12724218

Submitter
Handle	EGP_SNPS
Submitter SNP ID	IGFBP2-004695
RefSNP(rs#)	rs9341105
Submitted Batch ID	IGFBP2-PDR90-100703
Submitted Date	Oct 08, 2003
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Oct 8 2003 12:00:00:000AM

Resource Links
GenBank Accession	AY398667
Submitted Gene Name	IGFBP2
Submitted Gene ID	3485
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	158
Population	PDR90

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 14
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGACTCCCTT CCGCCAGCTT GCCCCAGCTG CGTTCTCCTC CCCAGTGCCC AGACGCCTTC
 CGCATTTTTG TGCACCGGCC TGGGAAGAGG GGATGTTAAG CAGGGGTGGA AGGTGGGGGG
 TGGGGCTGGA AGCTGAGTGG GTGCACTCAA AAGAAGTGAC CAATGTCAGG GGTGCCTGAG
 AAAGAGTCGG GCTGGGGGAG GGGAGCACTT TGGGAAGGAG CCTGAGCTTG CAAGGGTGCA
 GGAGAAAAAG GGGTC
 R
 AGGTTGGAGG CTTTTGTGTG GGAGAGGGTC TTAGGCTGGG GCAGAGACTG GAGTCACTGG
 ATGGAGAGTG CTGGGTCCGA GTTGGGTGGG GCCTGGCCCA GACGGAGATC TTAGCACTGA
 ATCCTCTGCC TCCCACTCCA TCTCCCGTCC CGTCTTCTCT CCTCTCCGAA GAATGAGCAC
 CCCCCCTCCA GCCTGCATTC CTCTTTGAGC AGGTTGCTTT TGAGAATTTT AAACATACCC
 TCTTATTTCG AGGCA

Submitted Frequency for ss12724218

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PDR90	158	A=0.85443002	G=0.14557000	0.249 +/-0.056			IGFBP2-PDR90-100703	EGP_SNPS

dbSNP summary of Genotypes for ss12724218

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	158	158	A=0.85443038	G=0.14556962	A/A=0.74683547 A/G=0.21518987 G/G=0.03797468	Pr(chiSq=1.439,df=1) =0.251	Genotype Freq.
HapMap-CEU	226	226	A=0.68141592	G=0.31858408	A/A=0.49557522 A/G=0.37168142 G/G=0.13274336	Pr(chiSq=2.341,df=1) =0.150	Genotype Freq.
HapMap-JPT	172	172	A=0.98255813	G=0.01744186	A/A=0.96511626 A/G=0.03488372	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	A=0.73451328	G=0.26548672	A/A=0.56637168 A/G=0.33628318 G/G=0.09734514	Pr(chiSq=2.144,df=1) =0.150	Genotype Freq.
HAPMAP-ASW	98	98	A=0.69387758	G=0.30612245	A/A=0.46938777 A/G=0.44897959 G/G=0.08163265	Pr(chiSq=0.158,df=1) =0.752	Genotype Freq.
HAPMAP-CHB	82	82	A=0.95121950	G=0.04878049	A/A=0.90243900 A/G=0.09756097	Pr(chiSq=0.010,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	170	170	A=0.97647059	G=0.02352941	A/A=0.95294118 A/G=0.04705882	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	A=0.69886363	G=0.30113637	A/G=0.51136363 A/A=0.44318181 G/G=0.04545455	Pr(chiSq=4.064,df=1) =0.050	Genotype Freq.
HAPMAP-LWK	180	180	A=0.74444443	G=0.25555557	A/A=0.56666666 A/G=0.35555556 G/G=0.07777778	Pr(chiSq=0.387,df=1) =0.584	Genotype Freq.
HAPMAP-MEX	98	98	A=0.79591835	G=0.20408164	A/A=0.61224490 A/G=0.36734694 G/G=0.02040816	Pr(chiSq=0.838,df=1) =0.371	Genotype Freq.
HAPMAP-MKK	286	286	A=0.63986015	G=0.36013985	A/G=0.49650350 A/A=0.39160839 G/G=0.11188811	Pr(chiSq=0.854,df=1) =0.371	Genotype Freq.
HAPMAP-TSI	176	176	A=0.69886363	G=0.30113637	A/A=0.48863637 A/G=0.42045453 G/G=0.09090909	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss12724218

There is no individual genotype data for ss12724218.

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