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Submitted SNP(ss) Details: ss12724220           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-005103
RefSNP(rs#)rs9341107
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724220|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TCTTCTCTCC TCTCCGAAGA ATGAGCACCC CCCCTCCAGC CTGCATTCCT CTTTGAGCAG
 GTTGCTTTTG AGAATTTTAA ACATACCCTC TTATTTCGAG GCAGCGAACC TCAGCAGTTC
 CGGCTTTGCT GTTAGCTCTT TTGTCTTTGT TCCCGGGACT CAGGGGCTGT GTTGCTGCTG
 GCTTCCTGGG GATGGCAAGG ATGCAGGGGT GGGGGTGGGC ACATCAGTGG GTGGAAGGAG
 TGGGTGGTGG TGAGC
 Y
 TGTATCCCAC GGGGACGATG GGCTGGGGCT TGTTGGTTCA AAGAAACTGA GAAGTCAGAC
 TTGGGGGAAG GGGTGGGTAG GCCTAGAAGA AAAACCGAAA GGAGACCCTG AGATCTGCTT
 GAAGTTGGGA CTCTAAAAGC GTGTGTATGT GTTTGGTGGT GGAGTGGATA GAAGTGCCTA
 GAAATGTCAG GGTCGAGGAG GGAACAGGGT TGGGCCAGTC CAGGCCCTTT CAGAATTAAG
 GCTGGGCTAG ACCGG

  Submitted Frequency for ss12724220 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90160C=0.85000002
T=0.15000001
0.255 +/-0.056IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724220 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90160160C=0.85000002
T=0.15000001C/C=0.73750001
C/T=0.22499999
T/T=0.03750000
Pr(chiSq=1.107,df=1)
=0.294
Genotype
Freq.

  Submitted individual genotype for ss12724220 back to top
There is no individual genotype data for ss12724220.

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