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Submitted SNP(ss) Details: ss12724222           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-005676
RefSNP(rs#)rs9341109
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize168
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724222|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGCGGGGCCG CCCGAGTGGC CGTTTGGCCC GCTGCACGTA TAAAGGTGCT ACAGAAATGT
 GTAGTCGTTC AAAGTCCCAg ggcgggcaga caggcaggca ggcaggcggg cgggcgggcg
 ggcgggcggg cCTGGGGAGG CTCTGCATCT GCAGTTGCCG GGGAAGAATA AAGGGGGGAA
 GAGGCAAGCA CTGATTTACA GTGGTTCAGT GCAGCTTCAA AAAAAAAGGG GGAAAAAGCA
 ATGGGACTTC TGGCT
 Y
 AGAGTACTGC TTTGCATCTC GTCTTGCATA AATTTGCATA CTGAGTTCAA AGTCGTAAAA
 TAGACTAGGG AAATGAGTGG GATCTACTGT CACTGATTGT TAACACCACT ACCTTCCACC
 TCCCCTCCCC CCATCTGGAC AGAACTCCCG GCACTAGTTC TGCTAAGCAG CGCTGCCTGA
 GTCACCAGTC ACCACTGTTC ATGAAAAGAA GGAGATGGGG AAGCGCCTGT CTAGGAGACC
 AAGCAGGGTG TGGCA

  Submitted Frequency for ss12724222 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90168C=0.98214298
T=0.01785700
0.035 +/-0.028IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724222 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90168168C=0.98214287
T=0.01785714C/C=0.96428573
C/T=0.03571429
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12724222 back to top
There is no individual genotype data for ss12724222.

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