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Submitted SNP(ss) Details: ss12724223           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-005825
RefSNP(rs#)rs9341110
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize170
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724223|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 TGCAGTTGCC GGGGAAGAAT AAAGGGGGGA AGAGGCAAGC ACTGATTTAC AGTGGTTCAG
 TGCAGCTTCA AAAAAAAAGG GGGAAAAAGC AATGGGACTT CTGGCTCAGA GTACTGCTTT
 GCATCTCGTC TTGCATAAAT TTGCATACTG AGTTCAAAGT CGTAAAATAG ACTAGGGAAA
 TGAGTGGGAT CTACTGTCAC TGATTGTTAA CACCACTACC TTCCACCTCC CCTCCCCCCA
 TCTGGACAGA ACTCC
 S
 GGCACTAGTT CTGCTAAGCA GCGCTGCCTG AGTCACCAGT CACCACTGTT CATGAAAAGA
 AGGAGATGGG GAAGCGCCTG TCTAGGAGAC CAAGCAGGGT GTGGCAGTGT GCACCCTGGC
 CTCGGAGGCA GGGCCTCTCT GAAGGGTGTG GCCCGACAGA TTCTGGACCA GTGAGGCAAG
 TGGTGTTCTT TCTGACGCCT GGGGCTGCCG TTGCCCATGG TGGGCTGCAG TTTGAGGAAG
 CTGCAGAATC CGGGT

  Submitted Frequency for ss12724223 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90170C=0.98235297
G=0.01764700
0.035 +/-0.028IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724223 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90170170C=0.98235291
G=0.01764706C/C=0.96470588
C/G=0.03529412
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12724223 back to top
There is no individual genotype data for ss12724223.

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