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Submitted SNP(ss) Details: ss12724224           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-006021
RefSNP(rs#)rs9341111
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize168
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724224|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TCACTGATTG TTAACACCAC TACCTTCCAC CTCCCCTCCC CCCATCTGGA CAGAACTCCC
 GGCACTAGTT CTGCTAAGCA GCGCTGCCTG AGTCACCAGT CACCACTGTT CATGAAAAGA
 AGGAGATGGG GAAGCGCCTG TCTAGGAGAC CAAGCAGGGT GTGGCAGTGT GCACCCTGGC
 CTCGGAGGCA GGGCCTCTCT GAAGGGTGTG GCCCGACAGA TTCTGGACCA GTGAGGCAAG
 TGGTGTTCTT TCTGA
 Y
 GCCTGGGGCT GCCGTTGCCC ATGGTGGGCT GCAGTTTGAG GAAGCTGCAG AATCCGGGTC
 TTCTTTGTTT GAAATTTCCC TACTCAGCTT CCACATATGT CCAAAACATT TACTGTGATA
 AGTCCCTTTG TGTGGTGGTA ATGACCCACT TCTTTAGACA AGATATTTGA GGAAGGTTCG
 AGAACAGAAA AATTCTACTT AACAATGTTA AGGAATCTGA GAAAAGTGGG GCACAGGAGT
 CTCTAGGTTA GAATA

  Submitted Frequency for ss12724224 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90168C=0.99404800
T=0.00595200
0.012 +/-0.017IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724224 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90168168C=0.99404764
T=0.00595238C/C=0.98809522
C/T=0.01190476
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724224 back to top
There is no individual genotype data for ss12724224.

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