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Submitted SNP(ss) Details: ss12724225           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-006422
RefSNP(rs#)rs9341112
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize152
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724225|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CCACTTCTTT AGACAAGATA TTTGAGGAAG GTTCGAGAAC AGAAAAATTC TACTTAACAA
 TGTTAAGGAA TCTGAGAAAA GTGGGGCACA GGAGTCTCTA GGTTAGAATA GGTGGTAGAG
 CCTGGAAGGA GAGAAGAACC CATCTGTTGT ATTCCCGAGG GTCTGCCCAC ACAATGGCTC
 TTGGCCAAGT GGACTGTTGA GCTTCCTGTC AGGCAGAGGG AAGAGGGAGG CTTAGATAGT
 TCTCACTGTT GGCCT
 R
 CTTCAGCACT GAGCTTCAAG ACTTTCAGGC AAATCATTCC TTCAGGCTCA GAGGCTGGAA
 ATTAGTTCTA TAAAAATGCC ATGGggccgg tcgcattggc tcatgccctg taatcccagc
 actttgggag gccgaggcag gtggatcaca aggtcaggag tttggagacc agcctggcca
 gtatagtgaa acctcttctc tgctacaaat acaaaaatta gctgggcatg gtggagcatg
 cctgtagtcc cagct

  Submitted Frequency for ss12724225 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90152A=0.99342102
G=0.00657900
0.013 +/-0.018IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724225 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90152152A=0.99342108
G=0.00657895A/A=0.98684210
A/G=0.01315789
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724225 back to top
There is no individual genotype data for ss12724225.

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