NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12724226           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-006603
RefSNP(rs#)rs9341113
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize156
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724226|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TGGCCAAGTG GACTGTTGAG CTTCCTGTCA GGCAGAGGGA AGAGGGAGGC TTAGATAGTT
 CTCACTGTTG GCCTACTTCA GCACTGAGCT TCAAGACTTT CAGGCAAATC ATTCCTTCAG
 GCTCAGAGGC TGGAAATTAG TTCTATAAAA ATGCCATGGg gccggtcgca ttggctcatg
 ccctgtaatc ccagcacttt gggaggccga ggcaggtgga tcacaaggtc aggagtttgg
 agaccagcct ggcca
 R
 tatagtgaaa cctcttctct gctacaaata caaaaattag ctgggcatgg tggagcatgc
 ctgtagtccc agctgcttgg gaggctgagg caggagaatt gcttgaaccc gggaggtgga
 gcttgcagtg agctgggatt gcatcactgc tctccagcct gggcaacaga gcaaaaaaac
 tccgtctcaa aaaataaata aaataaaaaT GCCACGGGTT ggccaggcgc ggtggctcac
 gcctgtaatt ccagc

  Submitted Frequency for ss12724226 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90156G=0.95512801
A=0.04487200
0.086 +/-0.043IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724226 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90156156G=0.95512819
A=0.04487180G/G=0.91025639
A/G=0.08974359
Pr(chiSq=0.015,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12724226 back to top
There is no individual genotype data for ss12724226.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement