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Submitted SNP(ss) Details: ss12724227           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-006751
RefSNP(rs#)rs9341114
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize164
PopulationPDR90
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724227|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 AAATGCCATG Gggccggtcg cattggctca tgccctgtaa tcccagcact ttgggaggcc
 gaggcaggtg gatcacaagg tcaggagttt ggagaccagc ctggccagta tagtgaaacc
 tcttctctgc tacaaataca aaaattagct gggcatggtg gagcatgcct gtagtcccag
 ctgcttggga ggctgaggca ggagaattgc ttgaacccgg gaggtggagc ttgcagtgag
 ctgggattgc atcac
 W
 gctctccagc ctgggcaaca gagcaaaaaa actccgtctc aaaaaataaa taaaataaaa
 aTGCCACGGG TTggccaggc gcggtggctc acgcctgtaa ttccagcact tagggaggct
 gaggtgggca gatcacctaa ggccaggagt tcaagaccag cctggctaac atagtgaaac
 cccatctcta ctaaaaatgc aaaaattagt tgggcatggt ggcacctgcc tgtagtccca
 gctgctcggg aCTCT

  Submitted Frequency for ss12724227 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90164T=0.99390203
A=0.00609800
0.012 +/-0.017IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724227 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90164164T=0.99390244
A=0.00609756T/T=0.98780489
A/T=0.01219512
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724227 back to top
There is no individual genotype data for ss12724227.

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