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Submitted SNP(ss) Details: ss12724228           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-006787
RefSNP(rs#)rs9341115
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize164
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724228|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 gtaatcccag cactttggga ggccgaggca ggtggatcac aaggtcagga gtttggagac
 cagcctggcc agtatagtga aacctcttct ctgctacaaa tacaaaaatt agctgggcat
 ggtggagcat gcctgtagtc ccagctgctt gggaggctga ggcaggagaa ttgcttgaac
 ccgggaggtg gagcttgcag tgagctggga ttgcatcact gctctccagc ctgggcaaca
 gagcaaaaaa actcc
 R
 tctcaaaaaa taaataaaat aaaaaTGCCA CGGGTTggcc aggcgcggtg gctcacgcct
 gtaattccag cacttaggga ggctgaggtg ggcagatcac ctaaggccag gagttcaaga
 ccagcctggc taacatagtg aaaccccatc tctactaaaa atgcaaaaat tagttgggca
 tggtggcacc tgcctgtagt cccagctgct cgggactctg aggtaggaga atcgcttgaa
 cctgggaact ggagg

  Submitted Frequency for ss12724228 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90164G=0.99390203
A=0.00609800
0.012 +/-0.017IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724228 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90164164G=0.99390244
A=0.00609756G/G=0.98780489
A/G=0.01219512
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724228 back to top
There is no individual genotype data for ss12724228.

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