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Submitted SNP(ss) Details: ss12724229           
Submitter
HandleEGP_SNPS
Submitter SNP IDIGFBP2-006843
RefSNP(rs#)rs9341116
Submitted Batch IDIGFBP2-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724229|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 agaccagcct ggccagtata gtgaaacctc ttctctgcta caaatacaaa aattagctgg
 gcatggtgga gcatgcctgt agtcccagct gcttgggagg ctgaggcagg agaattgctt
 gaacccggga ggtggagctt gcagtgagct gggattgcat cactgctctc cagcctgggc
 aacagagcaa aaaaactccg tctcaaaaaa taaataaaat aaaaaTGCCA CGGGTTggcc
 aggcgcggtg gctca
 Y
 gcctgtaatt ccagcactta gggaggctga ggtgggcaga tcacctaagg ccaggagttc
 aagaccagcc tggctaacat agtgaaaccc catctctact aaaaatgcaa aaattagttg
 ggcatggtgg cacctgcctg tagtcccagc tgctcgggac tctgaggtag gagaatcgct
 tgaacctggg aactggaggt tgcagtgagc cgagatggcg ccactccact ccagcctggg
 caacaagagt gaaac

  Submitted Frequency for ss12724229 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90162C=0.90123498
T=0.09876500
0.178 +/-0.053IGFBP2-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724229 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90162162C=0.90123457
T=0.09876543C/C=0.81481481
C/T=0.17283951
T/T=0.01234568
Pr(chiSq=0.069,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12724229 back to top
There is no individual genotype data for ss12724229.

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