NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss162979337           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chrY_3094725
RefSNP(rs#)rs113417164
Submitted Batch IDNA07022_snpassay_chrY
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162979337|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 AGGTTACAAA TTTTCCAAAT TTTTACACTC TGCTTCCCTT TTAAATATAA GTTCCAGTTT
 CAGAACATTT CTTTGCTCAT GCATATGTGC ATAGGGTGTT AGAAGTAGTC AGGTCACATC
 TTGCTTTGAT GCTCAGAAAT TTTTTCTGCC GTATACCCTA AATCATCTCT CTAAACTTCA
 AAGTTCCACA AATCCCTAGG GCAGGCACAC AATTTAACCA AGCTCTTTTC TAAAGCATAA
 CAAAAGTGAA
 S
 TCTGCATTAG TTTACAATAA GTTCCTAATC TCCATCTTTG TCTTCCTCTG CCAGGCCTTC
 ACCATTTTTA TCACTACCAG CATTTTGGCC TTGATCATTC AACCAGTCTC TAGGAAGTTC
 CACAATTTCC CCTATTTTCC TGTCTTCATC TGAGCCCTCC AAACTCTTCC AACCTCTTCC
 CATTACCTAG TTTCAAAATT GCTTCCATAT GTTCAGGTAT GTCTTTAGAA ATGCCTCACT
 CCTTGGTATC

  Submitted Frequency for ss162979337 back to top
There is no frequency submission for ss162979337.


  dbSNP summary of Genotypes for ss162979337 back to top
No sufficient data to compute Hardy-weinberg probability for ss162979337.


  Submitted individual genotype for ss162979337 back to top
There is no individual genotype data for ss162979337.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement