NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss205038362           
Submitter
HandleBCM-HGSC-SUB
Submitter SNP IDBCM_CMT_1011-26
RefSNP(rs#)rs1972379
Submitted Batch IDBCM_CMT_snps_submission_20100308
Submitted DateMar 15, 2010
Publication CitedN.D.
First entry to dbSNPMar 15 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBCM_CMT_1011_METHOD
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
chr1,557560,+,.,.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss205038362|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 TATGAAATGA TCTGCTGCAG TGCTCTGAGC CCTAGGATTT ATTTTTCTTT TCACCGTAGG
 TGGCCTGACT GGCATTGTAT TAGCAAACTC ATCACTAGAC ATCGTACTAC ACGACACGTA
 CTACGTTGTA GCCCACTTCC ACTATGTCCT ATCAATAGGA GCTGTATTTG CCATCATAGG
 AGGCTTCATT CACTGATTTC CCCTATTCTC AGGCTACACC CTAGACCAAA CCTACGCCAA
 AATCCATTTC
 R
 CTATCATATT CATCGGCGTA AATCTAACTT TCTTCCCACA ACACTTTCTC GGCCTATCCG
 GAATGCCCCG ACGTTACTCG GACTATCCCG ATGCATACAC CACATGAAAT ATCCTATCAT
 CTGTAGGCTC ATTCATTTCT CTAACAGCAG TAATATTAAT AATTTTCATA ATTTGAGAAG
 CCTTCGCTTC GAAGCGAAAA GTCCTAATAG TAGAAGAACC CTCCATAAAC CTGGAGTGAC
 TATATGGATG

  Submitted Frequency for ss205038362 back to top
There is no frequency submission for ss205038362.


  dbSNP summary of Genotypes for ss205038362 back to top
No sufficient data to compute Hardy-weinberg probability for ss205038362.


  Submitted individual genotype for ss205038362 back to top
There is no individual genotype data for ss205038362.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement