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Submitted SNP(ss) Details: ss2086844           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0225199
RefSNP(rs#)rs1318932
Submitted Batch ID001018_18
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2086844|allelePos=372|len=708|taxid=9606|alleles='C/T'|mol=Genomic
 ATCAGTTTCT TTTATGAGGC AAACATAACC TTGATATTAG TGTTCCAAAA ATATAGCATT
 TAAAATGTCA ACAAGCCAAG CTTGCATGTG GATAATAATA AAAGTGTTCC GAGTAAACAA
 AATTCTAAGC AAATGATTAA CAATTTCACA GCATAATAGA TTGCATTTTA TTCTGGTTAT
 ATAACAAAGA TTCAGCACTA GGAAACCTAG TAATTTATCA ACTAATCCGT AAAAATGTAA
 TAATTTTACA TATACATAGA TACTGAAAGT AAAGTCGATA AAAGTTAATA TTTGTGATTA
 GAAAACATTG TGGTTAAATA GTAATGTATT GAAGCAGGAA GTAGAATTGC AAACTGATAG
 TCTATATGCA A
 Y
 GATTATTAGA GTGGTACTCC AAGTGGTGTG TTCCTCATAT TGGTAAAGAA GCTAGAAAAA
 TTAAGTTAAA TATTGAGaaa ttaaaagaat aaacacaatg tgattccgaa atacacttat
 gagaatggct ataattgaaa agactaaaca caaaaatatt ggcaggaatg tagagcaatg
 agaactctca tatattgctg ttgtgggtgt aaactgggac agtcactttg aaaaccagtt
 ttgtaatATT TCCTGACACT AGATGTTTAC ATAGACCTTC ACACAGAAAA GTTATGTATC
 Cttataaata tttatataaa tatattGGAG AGAAAT

  Submitted Frequency for ss2086844 back to top
There is no frequency submission for ss2086844.


  dbSNP summary of Genotypes for ss2086844 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI120120C=0.99166667
T=0.00833333C/C=0.98333335
C/T=0.01666667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss2086844 back to top
There is no individual genotype data for ss2086844.

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